Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00743 ATGTTGAATGTTGATGTGATTGGGAACAAGAAAAGGAAAAGATGTGGGAGAGTTTTTAGGTTCAAGAATTTTGGAGAACAAGGATACCCGGTTATGTTTAATGGGGCATCATTTCGTGAAAATGTGAATACTTTACTTGAATATGCAAATTTAGAGAGTGATTTAAATATGGGAATGCCAATGTGGTCATTTCAACTTGAATTGCATCATCATCCACCTTTGCATATATTGTTGTTTGTGATTGAAGAATCAATTGAGGATGCGATCAATCGTCATTGCAACCATTGTCAATACGTTGGATGGGGCAACCATTTAATTTGCAATAAGAAGTATCATTTCCTATTGCCCTCAAAGGAAGCATTAAGTACATGTGCGAGCTGTGAAAGTTGCTGTGATTCAATTGGTACAATGAATAATGGTAAGTCAAAATTAATAGAATTAGAGGGACATATGATGCATGGTGTATTTCACTCTAATGGGTTCGGACATTTGCTATGTGTGAATGGCTTGGAAACGGGTTCAAATTTGGGTGGGAACCAAATCATGGAGTTTTGGAATCGTTTATGCAATGGATTGCAAGCAAGGAAAGTGAGTTTGAATGATACATCACAAAAAAGGGGCATGGAACTAAGACTTGTGAATGGAATAGCATATAGTGAGCCATGGTTTGGTCGTTGGGGCTACAAATTTGGTCGAGGATGTTTTGGTGTAACTCAATCGATGTACCAAAAAGCCATAGAAGCAATAAGAAGCATGCCACTATATCTAGTAACACACCACATTGGAAATTCAAATCATGAAATCCCATTAATCTTCTCGAGGTATCAAACACTTTCCGATCACTCTCTTATCACACTTGGTGACTTATTTCACTACATGTTAGAGCTCAAATCGCGCCTTCCGCGCGAAACATGCATTGGTTCCTACAACACAAGTTCCTTAGTCGAAACGAATTGTCGTTGGTCGCCTAAAAGGATCGAAATGGCAACAAGGGTCATTGTCGAGGCCTTAAAAAGAACAGAATTTAGGTGGATTTCAAGACAAGAAGTGAGGGACGCCGCACGCGCCTACATCGGCGACACGGGCTTGTTGGATTTTGTTTTGAAGTCACTAGGTAACCACATTGTTGGAAACTACTTGGTTCGTCGAAGCTTGAATCCGGTTACAAAAGTTTTGGAGTATTGTTTAGAAGATATTTCTAATGTTTACCCTTGTCATGAAGGGTTGATTTTGAGTAATAGTAATAAAGTTAAGGACAAGTATAAGATCACAAGAGGTCAACTTATGAAGGATATGATTTGTTTGTACAAGTATATACTTATTGACACAAAACCAATTATAGGGTCAGAATTTCTTTCAGCTATACCATTGGCAGCTAGGATAATTCTTGACACAAAATATCTTATTAAAGACTATGGAGAGATTATTCCTTTGCAAGTTGAATTAGGATCACAAGGAAAATTCAATCTTTATTGCACAATTTTGTTGAGGAATGTTAACAATGTAGAAAATGATCATGATTATTATTTGAACAAGTCATTGCCAATGCTACCTTATGAATGTATCGCATTGAAAAATTGTGCTACAATTAATGACTTAAAGTTAGAAGTTGAAAGAAATTTTAGGGAAATTTATTGGGGGTTAAGGAATTTTGTGGTGGAATCAAGTGGGAATTTGATGAATGTTAAGGGAAATGAAATGGTTTTTGGTATGATTGAAGTTGGTGGAAAACTTGTAGTTGAAGGCTGGCATGGTAGTGATATTGGAATAAACAAGATGGTTGAACAAATATGTGAAAGGGATCCAAACAAAGGTATTGTGGAGTGTACTTGTGGAACTAAAGAAGATGATGGTGAGAGAATGGTGAGTTGTGATATTTGTGAAATTTGGCAACATACTAGGTGTGTTAGAATTCCAAATGATGAACAAGTTCCTCATATTTTTCTATGCAAAAGGTGTGAGCAAGAAATTGTTCTTTTCCCTTCTTTGCCATAG 1995 0.3674 MLNVDVIGNKKRKRCGRVFRFKNFGEQGYPVMFNGASFRENVNTLLEYANLESDLNMGMPMWSFQLELHHHPPLHILLFVIEESIEDAINRHCNHCQYVGWGNHLICNKKYHFLLPSKEALSTCASCESCCDSIGTMNNGKSKLIELEGHMMHGVFHSNGFGHLLCVNGLETGSNLGGNQIMEFWNRLCNGLQARKVSLNDTSQKRGMELRLVNGIAYSEPWFGRWGYKFGRGCFGVTQSMYQKAIEAIRSMPLYLVTHHIGNSNHEIPLIFSRYQTLSDHSLITLGDLFHYMLELKSRLPRETCIGSYNTSSLVETNCRWSPKRIEMATRVIVEALKRTEFRWISRQEVRDAARAYIGDTGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISNVYPCHEGLILSNSNKVKDKYKITRGQLMKDMICLYKYILIDTKPIIGSEFLSAIPLAARIILDTKYLIKDYGEIIPLQVELGSQGKFNLYCTILLRNVNNVENDHDYYLNKSLPMLPYECIALKNCATINDLKLEVERNFREIYWGLRNFVVESSGNLMNVKGNEMVFGMIEVGGKLVVEGWHGSDIGINKMVEQICERDPNKGIVECTCGTKEDDGERMVSCDICEIWQHTRCVRIPNDEQVPHIFLCKRCEQEIVLFPSLP 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00743 664 Pfam PHD-finger 609 655 IPR019787 -
Car02g00743 664 SMART PHD_3 608 654 IPR001965 -
Car02g00743 664 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 8 664 - -
Car02g00743 664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 599 659 IPR013083 -
Car02g00743 664 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 664 - -
Car02g00743 664 CDD PHD_MMD1_like 608 653 - -
Car02g00743 664 SUPERFAMILY FYVE/PHD zinc finger 594 656 IPR011011 -
Car02g00743 664 ProSitePatterns Zinc finger PHD-type signature. 609 653 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00743 Car-Chr2 10243094 10246420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00743 10 664 PHD Transcription Factor Family AT5G22260 51.479 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car02g00743 PHD 7.5e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00743 - - mtr:MTR_5g040700 1253.81