Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00729 ATGGAATTGGAAGCTGATCATCATCAAAATAATGGAATCCGAAGCAGACCAAATTTTCCTCTTCAACTTTTAGAGAAAAAAGACATCATCGATGATATCTCCGAACAACCTTGTTCAACCACCGCAAACGACGGCTGTTCCGCCATCGTTACATCAAACAACACGGCCGACCAGCAGAAAAAGCCACCgccgaagcgcgcctcgacgaaagacaggcacacgaaagtcgacggacgaggtcgtcggatccgtatgccggcagcctgcgccgccagagttttccagctgacacgtgagctcggacacaagtccgacggcgagacgattgagtggctgcttcaacaagctgagccagccgtcatcgccgccacaggcaccggcacaattccggcgAACTTCACCTCACTTAATATCTCTCTTAGAAGCTCAGGATCCACCATGTCGGCGCCGTCGCACTATTTTCGAGCTGAAGATTCAAGAAGAACTAATAGCACAAACATGTTGGAGAATCATAATCCTTCTTCATTATCAGCAATTTTGAATTTCAACAACGTGCAAAATGCTATTCTACAAGCAAAACAAGAGCTCCGGGAAGAAAACGCCGCCGCAGGCGGCGGCGGTGGTTTCGAATCCGTGGCTTCGGATTCGGATGGAAACATAGGGAGAAAAAGAAGATCGGAGCAAGAATTTTTATCACAAAATATGGGAAGCTATTTGTTACAATCAAATGTTGGGTCACTTCCTTCAAGTCATGCTTCTAATACGGCAGCGTTTTGGatggtaactggtcatggcaaccaaggtgttaatgttggtggtggtggtaatggaaatgAACCTATTTGGGCTATTCCTTCTGTTGGTAATAGTGGTAATTTGTATAGAGGAGCTATGTCTTCTCCTAATGGAATTCATTTCATGAATTTTGGTTCTCCAATGTCTCTTATGCCTGGAAGTCAATTAGGTTCTGGCATCGTCggtgttggtggtggtaatggtggtTTTTTGGCTGAAAGCAATTTGAATATGCTTTCAGCTATGAATGCTTATAGGCAGATTAATTCGACGAATTGTGTTTCAGATTCGTCGGGACAACATCATGGAGGTGGTGGAAGTGGAAGAGACGATGGACATGATTCAACTAGTCAACATTCATGA 1158 0.3143 MELEADHHQNNGIRSRPNFPLQLLEKKDIIDDISEQPCSTTANDGCSAIVTSNNTADQQKKPPPKRASTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRAEDSRRTNSTNMLENHNPSSLSAILNFNNVQNAILQAKQELREENAAAGGGGGFESVASDSDGNIGRKRRSEQEFLSQNMGSYLLQSNVGSLPSSHASNTAAFWMVTGHGNQGVNVGGGGNGNEPIWAIPSVGNSGNLYRGAMSSPNGIHFMNFGSPMSLMPGSQLGSGIVGVGGGNGGFLAESNLNMLSAMNAYRQINSTNCVSDSSGQHHGGGGSGRDDGHDSTSQHS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00729 385 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 9 156 - -
Car02g00729 385 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 156 385 - -
Car02g00729 385 ProSiteProfiles TCP domain profile. 69 123 IPR017887 -
Car02g00729 385 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 156 IPR005333 GO:0003700
Car02g00729 385 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 156 385 IPR005333 GO:0003700
Car02g00729 385 Coils Coil 182 202 - -
Car02g00729 385 MobiDBLite consensus disorder prediction 371 385 - -
Car02g00729 385 MobiDBLite consensus disorder prediction 63 77 - -
Car02g00729 385 Pfam TCP family transcription factor 68 233 IPR017887 -
Car02g00729 385 MobiDBLite consensus disorder prediction 200 221 - -
Car02g00729 385 MobiDBLite consensus disorder prediction 358 385 - -
Car02g00729 385 MobiDBLite consensus disorder prediction 52 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00729 Car-Chr2 9876188 9878001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00729 1 385 TCP Transcription Factor Family AT1G69690 38.780 1.48e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Car02g00729 TCP 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00729 - - gmx:100809966 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00729 02 9876188 9878001 Car02g00729 02 9876188 9878001 ECH
Car02g00821 02 11727660 11729693 Car02g00729 02 9876188 9878001 PCT
Car02g00729 02 9876188 9878001 Car07g00953 07 8410675 8412000 PCT