Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00708 ATGTTGCAGACACAGTCCTACACCATTACTACAAAACCATTCTCAGTCTCAAACCACTCTTTCACCACTCCAATTAAATCAATTCCTTTAAGGCATGCGGGCCCCACCTTCTCCATCTCTCTTCCACAATTCTCTGTCACGTGTCACCACCCACAACTCTTCCAACAAAAACCATTCCCTCCACCACCTCAACGCCCTCAACCTCCTTCAGTGGGAGAATTGACACCAAGGGTTTTTGTTGGTCACTCAGTTTACAAAGGGAAAGCTGTTCTCACGGTGTCTCCTAGAGCTCCGGAATTCACTTCAATGGAAtcagggtcattcaagatatctagagaaggttgtatgcttctacagtttgctcctgctgtcggtgttcaccaatatgattggaacagaaagcagGTATTTTCACTATCAGTCAATGAAATGGGATCTCTAATTAGCCTTGGTGCAAAAGACTCTTGTGAAATTTTTCACGACCCTTTTATTGGAAAAGGtgatgaaggtaaagtgagaaaagttttgaaggtggagccacttcaagacggttctggtcacatgtttaacctaaGTGTTCAAAACAAGATCGAGAACATAAACGAAAGCATCTTCATCCCTGTCACAAAGGCCGAGCTTGCAGTTTTCAATTCACTTTTCCATTTTATCATGCCATGCCTTTTAGGTTGGAATGCCTTTGGTAGCTCCATAAAACCAGAAGTATATACTGCAAACCCAAAACATGAAGACTATGAATGGAACAGATAG 768 0.3333 MLQTQSYTITTKPFSVSNHSFTTPIKSIPLRHAGPTFSISLPQFSVTCHHPQLFQQKPFPPPPQRPQPPSVGELTPRVFVGHSVYKGKAVLTVSPRAPEFTSMESGSFKISREGCMLLQFAPAVGVHQYDWNRKQVFSLSVNEMGSLISLGAKDSCEIFHDPFIGKGDEGKVRKVLKVEPLQDGSGHMFNLSVQNKIENINESIFIPVTKAELAVFNSLFHFIMPCLLGWNAFGSSIKPEVYTANPKHEDYEWNR 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00708 255 Pfam Whirly transcription factor 84 218 IPR013742 GO:0003697|GO:0006355|GO:0006952
Car02g00708 255 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 41 255 IPR013742 GO:0003697|GO:0006355|GO:0006952
Car02g00708 255 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 41 255 - -
Car02g00708 255 Gene3D Transcriptional Coactivator Pc4; Chain A 72 249 IPR009044 GO:0003677|GO:0006355
Car02g00708 255 SUPERFAMILY ssDNA-binding transcriptional regulator domain 76 254 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00708 Car-Chr2 9405270 9408837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00708 4 255 Whirly Transcription Factor Family AT1G14410 53.696 1.57e-93 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Car02g00708 Whirly 3.5e-58 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00708 - - lang:109355868 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00708 02 9405270 9408837 Car02g00708 02 9405270 9408837 ECH
Car02g00708 02 9405270 9408837 Car07g02084 07 25581617 25585298 PCT