Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00706 ATGGCGAAATTGTATCTTTCCCTCCTGTTAACATGTTTGGCGGTGATCATACCTACATTAGTGCATGCCAATATGAAAGAGGAAAGCTCATACTGGGAAAAGCAGCTTCCAGTGCTTAGTGATTCATATTGGAAGGAAAAAGCAGAAATTGCTGCAAAGGCAAACGAAGAAGCTTATACTCCTGATCCTTATGCGGTATCCGGCAACCTGACTTCCACTATTAGCGAAATGATAATTGGTGGCAAGAAAGGAAGAAGGAATCTCCGAGGACGTAAAACAGCTGGTCCATGCATGGCTACAAACCCCATTGACAGGTGTTGGAGGTGCGATCCTAACTGGGCAAACAATCGCAAGAAGCTTGCAGATTGTGTGCAGGGTTTCGGAAGGAAGACAACCGGTGGAAAGGCTGGTCCTTTCTATGTGGTAACTGATCCCTCAGATAGTGACATGGTGAATCCACGTCCAGGTACCCTTAGGCACGCAGTTACAAGAAATGGTCCTTTGTGGATCATTTTTGCTCGTAGCATGAACATTAGGCTCAACCAAGAGCTCATAATGACGAGCGACAAGACCATTGACGGTCGAGGAGCTGATATTGTCATTGCTAATGGGGCTGGTATTACTATCCAGTACATCAGGAATGTGATCATCCATGGGATCAAAGTTTTTGACATTGTGGTTGGTAGTGGTGGACTTGTTAGAGATTCTGAGAACCATTATGGTCTAAGGACAATGAGTGATGGGGATGGAATTTCAATTTTTGGCTCCAGCAATATTTGGATTGACCATGTTTCCATGAGAAACTGCAGAGATGGACTCATTGATGCCATTATGGGATCCACTGCTATTACCATCTCCAATAGCCATTTCACAGATCACAACGAGGTAATGCTGTTTGGTGCAAGTGATGGATATGATGCTGATCAGAAAATGCAGATCACAGTTGCATTCAACCACTTCGGTAAGAGATTAATCCAAAGGATGCCAAGGTGCAGATTTGGTTTTATCCATGTGGTTAACAATGACTACACTCACTGGGAAATGTATGCCATTGGTGGTAGCAAACATCCTACCATTATCAGTGAGGGTAACCGATTCATAGCCCCTGACAACGGCTATGCTAAAGAGATAACAAAGAGGGAGTACTCACCAGAATCAGAGTGGAAAAACTGGCAATGGAGATCAATCAACGACGTGTACATGAACGGAGCATTTTTCAGACAAGGTGGATCTGAGCTGACTAACAGACCATTCTCAAAGAAGGACATGATCACAGCTAAGCCTGGAGCTTATGTGGGAAGGCTTACTCGTTATTCAGGCAGCCTTAAATGCATAGTGGGGAAGCCTTGTTAA 1353 0.442 MAKLYLSLLLTCLAVIIPTLVHANMKEESSYWEKQLPVLSDSYWKEKAEIAAKANEEAYTPDPYAVSGNLTSTISEMIIGGKKGRRNLRGRKTAGPCMATNPIDRCWRCDPNWANNRKKLADCVQGFGRKTTGGKAGPFYVVTDPSDSDMVNPRPGTLRHAVTRNGPLWIIFARSMNIRLNQELIMTSDKTIDGRGADIVIANGAGITIQYIRNVIIHGIKVFDIVVGSGGLVRDSENHYGLRTMSDGDGISIFGSSNIWIDHVSMRNCRDGLIDAIMGSTAITISNSHFTDHNEVMLFGASDGYDADQKMQITVAFNHFGKRLIQRMPRCRFGFIHVVNNDYTHWEMYAIGGSKHPTIISEGNRFIAPDNGYAKEITKREYSPESEWKNWQWRSINDVYMNGAFFRQGGSELTNRPFSKKDMITAKPGAYVGRLTRYSGSLKCIVGKPC 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00706 450 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Car02g00706 450 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Car02g00706 450 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Car02g00706 450 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Car02g00706 450 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Car02g00706 450 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Car02g00706 450 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Car02g00706 450 PRINTS Pollen allergen Amb family signature 421 444 IPR018082 -
Car02g00706 450 Pfam Pectate lyase, N terminus 41 88 IPR007524 GO:0030570
Car02g00706 450 Pfam Pectate lyase 184 366 IPR002022 -
Car02g00706 450 Gene3D - 100 443 IPR012334 -
Car02g00706 450 SUPERFAMILY Pectin lyase-like 101 440 IPR011050 -
Car02g00706 450 PANTHER PECTATE LYASE 18-RELATED 6 450 IPR045032 GO:0030570
Car02g00706 450 SMART amb_all 175 372 IPR002022 -
Car02g00706 450 PANTHER PECTATE LYASE 6 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00706 Car-Chr2 9385804 9390357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00706 5 450 Polysaccharide Lyase AT1G14420 58.225 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00706 K01728 - gmx:100796307 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00706 02 9385804 9390357 Car02g00706 02 9385804 9390357 ECH
Car02g00706 02 9385804 9390357 Car07g00970 07 8555660 8557944 ECH