Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00697 ATGGCAAGTGGTAAGCTTTTTGGTGGTTCCAATATGTCACTTTTGCTTCAAAATGAAAGACTCCCTTGTTCCTCTGAAGTCCTTGAATCTCTTTGGGTTCATACCTCTAATCCTGCTTCTTTTCAAGGTTCAAAGTCAGTGGTTGATTTTGAGAATGTTGGTAGTGGAAGCAGAGTGGTAACAGATAGACCCTTCTTTCAACAAATTGAAAAAGAAGAGAATTGTGGTGATGAGGATTATGACGCATGCTTTCATCAACAAGGGAAAAAAAGGAGACTCTCAAGTGAACAAGTTCAGTTCCTTGAAAGAAACTTTGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTTCAACTTGCAAAAGAACTCGGTTTACAACCAAGACAAGTTGCAATATGGTTCCAAAACAGAAGAGCAAGGTTCAAAACAAAACAGCTTGAAAAAGACTATGGCACATTGAAAGCTAGCTTTGATAAACTCAAAGATGACTATGAACATCTTGTTCAAGAGAATGACAAGTTAAAAGAAGAGGTGAATTCTCTAAAGAATAAATTGAATCCAAGAGACGAAGAGAAAGAGAATTCAGATGACAAGTCATCACCAAATGGTGTAAATTCACCACACAACAACAATGATCCAATGGACTTAATATCAATTGCAAATTCTGAAAAAGGGTCAAAGGTTTCACTCTCAAATATGGTAAAATGCAAACAAGAAGATGCAAATTCAGCTAAAAGTGATGTGGTTGATTCTGATAGCCCACATTATCCTTCTTCATTCATGGAGCCAACATATTCTTCACATGCTTTTGAACATGAAAACTCAGATTTCTCACAAGATGATGAGGATATTAATGATAACTTGAGTGATAATCTTTTAACACTTCCTTGTTTACCAAAAGTTGAAGATGTTTGTTATGATGACCCACATGAAAATTCTTGTAATTTTGGGTTCCCAGTTGAAGATCAAACCTTCTGTTTCTGGCCTTACTGA 993 0.3615 MASGKLFGGSNMSLLLQNERLPCSSEVLESLWVHTSNPASFQGSKSVVDFENVGSGSRVVTDRPFFQQIEKEENCGDEDYDACFHQQGKKRRLSSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASFDKLKDDYEHLVQENDKLKEEVNSLKNKLNPRDEEKENSDDKSSPNGVNSPHNNNDPMDLISIANSEKGSKVSLSNMVKCKQEDANSAKSDVVDSDSPHYPSSFMEPTYSSHAFEHENSDFSQDDEDINDNLSDNLLTLPCLPKVEDVCYDDPHENSCNFGFPVEDQTFCFWPY 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00697 330 Coils Coil 157 184 - -
Car02g00697 330 MobiDBLite consensus disorder prediction 238 262 - -
Car02g00697 330 MobiDBLite consensus disorder prediction 247 262 - -
Car02g00697 330 PRINTS Lambda-repressor HTH signature 115 124 IPR000047 GO:0003677
Car02g00697 330 PRINTS Lambda-repressor HTH signature 124 140 IPR000047 GO:0003677
Car02g00697 330 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Car02g00697 330 Gene3D - 83 150 - -
Car02g00697 330 SUPERFAMILY Homeodomain-like 79 146 IPR009057 -
Car02g00697 330 MobiDBLite consensus disorder prediction 178 198 - -
Car02g00697 330 Pfam Homeodomain 89 142 IPR001356 GO:0003677
Car02g00697 330 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 330 IPR045224 GO:0003700
Car02g00697 330 Pfam Homeobox associated leucine zipper 144 185 IPR003106 GO:0006355|GO:0043565
Car02g00697 330 SMART HOX_1 87 148 IPR001356 GO:0003677
Car02g00697 330 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 330 - -
Car02g00697 330 MobiDBLite consensus disorder prediction 199 217 - -
Car02g00697 330 CDD homeodomain 89 145 IPR001356 GO:0003677
Car02g00697 330 MobiDBLite consensus disorder prediction 178 217 - -
Car02g00697 330 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00697 Car-Chr2 9215831 9218334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00697 89 255 Homeobox Transcription Factor Family AT3G01470 48.824 2.50e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car02g00697 Homeodomain 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00697 - K09338 adu:107489132 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00697 02 9215831 9218334 Car02g00697 02 9215831 9218334 ECH
Car02g00720 02 9614361 9615952 Car02g00697 02 9215831 9218334 PCT
Car02g00697 02 9215831 9218334 Car02g00697 02 9215831 9218334 PCT