Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00693 ATGAGTCGCAAGAGAGACAAACCCTACTTTTCCCGCCACGACTCCAAGCGCCGTCGCCCGCTGCCGGAGCCGGCGGAGGACGACAGACCAACTATGAGGCCGACACCTCCGTCTGCGGTGGTCGTCATGGGTCTCCCTCTGGACTGCTCTGTCCTCGATCTCAAGTCTCGATTCGAGATCTACGGCTCCATCTCTCGCATACGTATCGACCGTGACGCCGTCGGCTACATCACTTTCCGGAACAAGGATTCCGCCGATGCCGCCATCGCCGCTGGCCACGACCCTTCCTTTGGAGTCACCATTAACTCCAAAAAGGTTCAAGTGTTGTGGGCAACGGATCCTCTGGCTATGTGGAGGGAAGGAGTTGGTAAGAACAAGGATAGTGTATCGACATCTAAGCTTGCGCGAGCTGAGGTACCTTTGAGGAGACATGGAAGAGGTAATAAACTTGCTTCAGCTATAGGGAATACCAAAAGAAGTGAAGATAGTTCTGGTAGCTCAGTTCTTGAAGTACCTTTCAGGGGCAGAGAAATTGTTGCTTATGACGATATCATtgaagagaaggatgaatcaaatgaaagatTGTGGAGTTGGGGTGCTGGAACAGATGGTCAATTAGGAAATGGTCAACTTCAGGATGAACAAATCCCTCAACAACTCTCTCTTTCCTCACACTCACATATCTCCTCACTTGCCTGTGGCGCCGCTCATGTCATCGCCCTAACATCAGGTGGGAAAGTATTGTCATGGGGCAGGGGCAATAGTGGTCAACTAGGCCATGGAGAGGTTGTGAGTAACATGTTGTATCCCAAGGCTGTAACATCTTTGGACGAACATTTCATAACACATGTCTCTGCTGGATGGAGCCACTCAGGTTTTGTTTCAGATACTGGGTCCCTGTTCACTTGTGGGGATGGCTCCTTTGGTCAACTTGGGCATGGGGATTATGCTTCACACAGTTCACCAATCAAAGTGTCATTCTTTGTTGATCAACAGGTTGCAGGGGTTGCATGTGGAATGCGCCATTCTCTTGTCTTGTTGAAAGGTTGTCTTTTGAATCAAGTTTATGGATTTGGCTCTGGGAAGCGTGGTCAACTGGGTGTCTCCAAAGATAGAATCAAATCTATTAATCTTCCTAAAGTTATCAGTGGCTTTGAAGATGTGGAAATAGTTGGAATTGCTGCAAATGGAGATCATAGTGCTGCATTATCTGTTGATGGACATCTTTTTACCTGGGGAAGAGGCTTCAAGGGCTTTGAAGATTCTCACATTCCACAAAGTTTAAACTCTACGTTGAAATTTACTAAAGCCACTCTAGGATGGAACCACGGTTTAGCTATGACTGGTGAAGGGGAGGTTTATATGCTCGGTGGCAACCACCTTGGAGTGCTTAGTGATCTTCACAGTGTATGTCAAGCTAATCAGTTAACTGTAGATTCAAGAGAAGCCAATTTGGAGAAAGTTCCTGGTCTTGATGGGACGAAGGTTACTGATATTGCTACTGGAGCTGAGCATTCTGTCCTTGTCACAGACAATGGAGAAATCAAGACATGGGGTTGGGGTGAGCATGGTCAACTAGGGTTAGGGGATGCTGATGATCGAACCAGTCCTGTTACAGTAAGAGTTGGTTATGATTTAGATGAAGCTGCATCAACCCGAGTCTATTGCGGAAGTGGCTTCACATTTGCTTTAACCAAGTTCTAA 1704 0.4654 MSRKRDKPYFSRHDSKRRRPLPEPAEDDRPTMRPTPPSAVVVMGLPLDCSVLDLKSRFEIYGSISRIRIDRDAVGYITFRNKDSADAAIAAGHDPSFGVTINSKKVQVLWATDPLAMWREGVGKNKDSVSTSKLARAEVPLRRHGRGNKLASAIGNTKRSEDSSGSSVLEVPFRGREIVAYDDIIEEKDESNERLWSWGAGTDGQLGNGQLQDEQIPQQLSLSSHSHISSLACGAAHVIALTSGGKVLSWGRGNSGQLGHGEVVSNMLYPKAVTSLDEHFITHVSAGWSHSGFVSDTGSLFTCGDGSFGQLGHGDYASHSSPIKVSFFVDQQVAGVACGMRHSLVLLKGCLLNQVYGFGSGKRGQLGVSKDRIKSINLPKVISGFEDVEIVGIAANGDHSAALSVDGHLFTWGRGFKGFEDSHIPQSLNSTLKFTKATLGWNHGLAMTGEGEVYMLGGNHLGVLSDLHSVCQANQLTVDSREANLEKVPGLDGTKVTDIATGAEHSVLVTDNGEIKTWGWGEHGQLGLGDADDRTSPVTVRVGYDLDEAASTRVYCGSGFTFALTKF 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00693 567 MobiDBLite consensus disorder prediction 7 30 - -
Car02g00693 567 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 298 349 IPR000408 -
Car02g00693 567 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 451 512 IPR000408 -
Car02g00693 567 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 513 567 IPR000408 -
Car02g00693 567 SUPERFAMILY RCC1/BLIP-II 191 466 IPR009091 -
Car02g00693 567 MobiDBLite consensus disorder prediction 1 37 - -
Car02g00693 567 CDD RRM_SF 40 108 - -
Car02g00693 567 PRINTS Chromosome condensation regulator RCC1 signature 228 241 IPR000408 -
Car02g00693 567 PRINTS Chromosome condensation regulator RCC1 signature 508 529 IPR000408 -
Car02g00693 567 PRINTS Chromosome condensation regulator RCC1 signature 194 210 IPR000408 -
Car02g00693 567 PRINTS Chromosome condensation regulator RCC1 signature 247 263 IPR000408 -
Car02g00693 567 PRINTS Chromosome condensation regulator RCC1 signature 440 458 IPR000408 -
Car02g00693 567 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 245 297 IPR000408 -
Car02g00693 567 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 193 244 IPR000408 -
Car02g00693 567 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 113 IPR000504 GO:0003723
Car02g00693 567 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 91 IPR000504 GO:0003723
Car02g00693 567 Gene3D - 422 566 IPR009091 -
Car02g00693 567 PANTHER OS01G0777800 PROTEIN 195 561 - -
Car02g00693 567 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 195 561 - -
Car02g00693 567 SMART rrm1_1 39 109 IPR000504 GO:0003723
Car02g00693 567 Gene3D - 184 421 IPR009091 -
Car02g00693 567 SUPERFAMILY RNA-binding domain, RBD 24 118 IPR035979 GO:0003676
Car02g00693 567 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 499 509 IPR000408 -
Car02g00693 567 Gene3D - 1 115 IPR012677 -
Car02g00693 567 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 336 346 IPR000408 -
Car02g00693 567 Pfam Regulator of chromosome condensation (RCC1) repeat 354 403 IPR000408 -
Car02g00693 567 Pfam Regulator of chromosome condensation (RCC1) repeat 194 241 IPR000408 -
Car02g00693 567 Pfam Regulator of chromosome condensation (RCC1) repeat 513 564 IPR000408 -
Car02g00693 567 Pfam Regulator of chromosome condensation (RCC1) repeat 245 293 IPR000408 -
Car02g00693 567 Pfam Regulator of chromosome condensation (RCC1) repeat 298 346 IPR000408 -
Car02g00693 567 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 353 406 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00693 Car-Chr2 9046727 9055644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00693 1 185 Homeobox Transcription Factor Family AT1G27050 53.398 4.70e-59 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00693 - - gmx:100793672 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00693 02 9046727 9055644 Car02g00693 02 9046727 9055644 ECH