Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00684 ATGGGTATTGGCGATTACTACAAAATACTAAAGGTGAATCGTGATGCAACGAATGAAGATTTGAAGAAATCTTATAAGAATTTAGCAATGAAATGGCACCCAGATAAGAATAATCAATACCCTTTAAGGAAACAAGAGTTTGAGGCAAAGTTCAAGAAAATTTCTGAGGCTTATGATGTTCTTAGTGACCCTAAGAAGCGTCAGATCTATGATTTATATGGTGAATATCCGATTAACTCGAATCGAATCGGTGAGGAAAATGGTGATGGAAGTAATTTGAAGGAAGATGTAGCAGTTGACGTTGTTGAGAGTTGTTTGGTTTGTACTCTTGAAGAGCTTTATAAGGGTTGCAGGAAGAAGGTTAATATTATAAGGACTGTTCCTGATGAATTTGGGAAGTTGAAGTGCATAGAAGAAATCTTGAAGATAGACATTAAACCAGGTTGGAAGAAAGGCACAAAAATCACTTTTCCTGGCAAAGGAAACCAACAACCAGGATCTCCTCCATCCGATCTAATATTCGTCGTGAATGAGAGACCACACTCTTCCTTCAAAAGAGATGGAAATGATTTGGTAATGATTCAAAAGATATTACTTCTAGAATCTCTTGTAGGAAAGACTCTCAACTTGAGAACCTTGGATGGAAGAGATCTCACAATCGAAGTAACCGATATTGTGAAACCAGGCGATGAGTTGGTGGTTCCAGATGAAGGTATGCCAGTTGCAAAGGAACTAAACAAGAAAGGAAACCTTAGAATCAAGTTTGATGTTATGTTTCCATCAAGGCTTACCACACACCAAAAACATGATCTAAGAATGATTTTGTTTGATGCGGATGATAACTAA 846 0.3723 MGIGDYYKILKVNRDATNEDLKKSYKNLAMKWHPDKNNQYPLRKQEFEAKFKKISEAYDVLSDPKKRQIYDLYGEYPINSNRIGEENGDGSNLKEDVAVDVVESCLVCTLEELYKGCRKKVNIIRTVPDEFGKLKCIEEILKIDIKPGWKKGTKITFPGKGNQQPGSPPSDLIFVVNERPHSSFKRDGNDLVMIQKILLLESLVGKTLNLRTLDGRDLTIEVTDIVKPGDELVVPDEGMPVAKELNKKGNLRIKFDVMFPSRLTTHQKHDLRMILFDADDN 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00684 281 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Car02g00684 281 SMART dnaj_3 4 66 IPR001623 -
Car02g00684 281 SUPERFAMILY HSP40/DnaJ peptide-binding domain 106 192 IPR008971 GO:0006457|GO:0051082
Car02g00684 281 CDD DnaJ 5 63 IPR001623 -
Car02g00684 281 Gene3D DnaJ domain 4 103 IPR036869 -
Car02g00684 281 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 277 - -
Car02g00684 281 ProSiteProfiles dnaJ domain profile. 5 74 IPR001623 -
Car02g00684 281 CDD DnaJ_C 106 263 - -
Car02g00684 281 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 277 - -
Car02g00684 281 Gene3D - 181 261 - -
Car02g00684 281 Pfam DnaJ domain 5 71 IPR001623 -
Car02g00684 281 PRINTS DnaJ domain signature 7 25 IPR001623 -
Car02g00684 281 PRINTS DnaJ domain signature 25 40 IPR001623 -
Car02g00684 281 PRINTS DnaJ domain signature 46 66 IPR001623 -
Car02g00684 281 PRINTS DnaJ domain signature 66 85 IPR001623 -
Car02g00684 281 SUPERFAMILY Chaperone J-domain 3 81 IPR036869 -
Car02g00684 281 Gene3D - 104 179 - -
Car02g00684 281 Pfam DnaJ C terminal domain 106 260 IPR002939 -
Car02g00684 281 SUPERFAMILY HSP40/DnaJ peptide-binding domain 184 269 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00684 Car-Chr2 8882843 8884922 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00684 6 73 C2H2 Transcription Factor Family AT1G74250 36.232 4.86e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00684 K09510 - gmx:100778440 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00684 02 8882843 8884922 Car02g00684 02 8882843 8884922 ECH
Car02g00684 02 8882843 8884922 Car02g00684 02 8882843 8884922 PCT