Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00669 ATGGATCCAGCGCCAATAATCAACTCTCCTTCCAACACGGCATCCTATCACCTACCGGAGATCTGGAAGTTCCCGCCGGCTAGAACGCCGCACTTTGAGCATGCCTTCGGAGATTTTGCAACTGCTCCCACGCAGGAAGATCTCGGTAGAGACCCGGTCGCTTCGGAGCAGATACCGGTGAACCATGGCTGGAAAAGACGCGACACGGAGGAGGATTCGGTTAAAGGCGTTTCCACCAGTAATGCCAATGGCGGCAACAGCGTGAATGATGATGGAAAACGGAGTAAAACATCAGGGAACAGTAAAGGTGAAGTAATAGTAGGAGAAGAAAACAGTTCAGGAAAGCATGCGGAAAAAACTACTGAGGCACATCCTAAGCAAGATTACATTCATGTTCGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAGTTCTTCAGGATTTAGTCCCTGGTTGCAACAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATCAATTATATCCAATCACTTCAGAACCAAGTAGAGTTTTTGTCGATGAAGCTTGAAGCAGTAAATTCAAGATTGACCCCTGGTATTGATGTGTTTCCTCCTAAAGATTTTGATCAGCAAACTTATGATACAACCACCATACCATTTGGTTCACAAGCTACAAGAGATTACAGCCGGGGTTCATCACCGGAATGGTTGCATATGCAGGTAGGAAGTGGTTTTGGAAGAGCAACGTAG 780 0.4577 MDPAPIINSPSNTASYHLPEIWKFPPARTPHFEHAFGDFATAPTQEDLGRDPVASEQIPVNHGWKRRDTEEDSVKGVSTSNANGGNSVNDDGKRSKTSGNSKGEVIVGEENSSGKHAEKTTEAHPKQDYIHVRARRGQATDSHSLAERARREKISERMKVLQDLVPGCNKVIGKALVLDEIINYIQSLQNQVEFLSMKLEAVNSRLTPGIDVFPPKDFDQQTYDTTTIPFGSQATRDYSRGSSPEWLHMQVGSGFGRAT 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00669 259 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 259 IPR024097 GO:0006355
Car02g00669 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 188 IPR011598 GO:0046983
Car02g00669 259 PANTHER BNAC05G07950D PROTEIN 1 259 - -
Car02g00669 259 MobiDBLite consensus disorder prediction 38 124 - -
Car02g00669 259 CDD bHLH_AtBPE_like 128 213 - -
Car02g00669 259 Gene3D - 135 208 IPR036638 GO:0046983
Car02g00669 259 SMART finulus 144 194 IPR011598 GO:0046983
Car02g00669 259 Coils Coil 178 205 - -
Car02g00669 259 MobiDBLite consensus disorder prediction 75 107 - -
Car02g00669 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 206 IPR036638 GO:0046983
Car02g00669 259 MobiDBLite consensus disorder prediction 109 124 - -
Car02g00669 259 Pfam Helix-loop-helix DNA-binding domain 142 189 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00669 Car-Chr2 8624155 8627652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00669 1 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 53.879 7.65e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car02g00669 HLH 3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00669 - - gmx:100794893 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00669 02 8624155 8627652 Car02g00669 02 8624155 8627652 ECH
Car02g00669 02 8624155 8627652 Car07g02049 07 24703536 24707348 PCT