Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00603 ATGCATTTGATTCACTCTCAAATTCACCAAGGCAATGGTGCTAATGCTATTAACACCCCCCCTCCTCCATATTATTCCTCATTCCCTTCATTTCCTTATAGTTCTACCAACCAAAAACAATCAGAAGCAACCCAAGAATCTTCATCTTCTGGGAATAAAATAAGTCCTGCAATTCTTTTCATCATAGTTATATTAGCTGTTATATTTTTCATCTTAGGTTTCCTTCATTTACTAGTTAGGTTTCTCATAAAGCATAGATCTTCCTCATCAATTTCACAGTCAAGTAGATACCCTGAAATGTCTGAATCTGATGCATACCAAAGACAGTTACAACAGCTATTCAATCTTCATGACTCAGGTTTGGATCAAGCATTCATTGATGCTCTTCCTGTTTTCTTTTACAAAGAGATAATAGGTTTGAAAGAGCCATTTGATTGTGCTGTTTGTTTATGTGAGTTTTTGGAACAAGATAAATTGAGATTGTTGCCTAATTGTAACCATGCTTTTCACATTAACTGCATAGACACATGGTTGTTGTCTAATTCAACTTGTCCTCTATGTAGAGGGACACTTTATGCACAAGGGTTTTCATTTGAAAATCAAAATCCTGTTTTTGAGTTTGAGGGTTCAAGGGATGAAGATGGTGTTTTAGGCATCGGTGGTGTCGGTGGAATCGGTTCGTTTAACAAATCTTTGGAAAACCATATAATGAATGGGAAAAGGGTTTTTTCTGTTAGGCTTGGAAAGTTTAGAAGCTCAAATAATGGTGAAGGAGTTGAAAGAGGTGAAGGAGAGAGTAGTAGTAATTGTAACTTTGATGTTAGGAGATGCTATTCAATGGGGTCTTTTCAATATGTTCTTGCTGATTCTGATTTGCAAGTTGCTTTGAGACCTTCTAAAGGTGATGGTAGTATGAGACAATTGAAGGGAATTAGAGAAACTAATGATGAGAGTTTTTCTATTGATGGTGATGTTGAAGGCAAGAAGATCAACATTGCAAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATATGGCAATGGTCTAAGAAAGATAATAAGATACCAAGTTCATCAGCTGCTACACATTTTCATGATTCTGTTAACACTGAAAGTTTGCCATGGATGAATAAAGTTAGAGGTACATGA 1146 0.3604 MHLIHSQIHQGNGANAINTPPPPYYSSFPSFPYSSTNQKQSEATQESSSSGNKISPAILFIIVILAVIFFILGFLHLLVRFLIKHRSSSSISQSSRYPEMSESDAYQRQLQQLFNLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPNCNHAFHINCIDTWLLSNSTCPLCRGTLYAQGFSFENQNPVFEFEGSRDEDGVLGIGGVGGIGSFNKSLENHIMNGKRVFSVRLGKFRSSNNGEGVERGEGESSSNCNFDVRRCYSMGSFQYVLADSDLQVALRPSKGDGSMRQLKGIRETNDESFSIDGDVEGKKINIARKGESFSVSKIWQWSKKDNKIPSSSAATHFHDSVNTESLPWMNKVRGT 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00603 381 Pfam Ring finger domain 145 188 IPR001841 -
Car02g00603 381 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 374 - -
Car02g00603 381 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Car02g00603 381 SMART ring_2 146 187 IPR001841 -
Car02g00603 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 374 - -
Car02g00603 381 CDD RING-H2_PA-TM-RING 145 188 - -
Car02g00603 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 194 IPR013083 -
Car02g00603 381 SUPERFAMILY RING/U-box 125 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00603 Car-Chr2 7218513 7220260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00603 48 358 C3H Transcription Factor Family AT2G18650 43.750 3.68e-62 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00603 - - gmx:100805154 487.648