Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00601 ATGAGTAATTCCTCGGGGGATGTTAACAACTTTGAGAGGCCATCCAAGACACTCAAGACTAACCCTTCAAACACAGGGTACCCTTCCTCACAAAGAGAGGATTCTTCTTTCCCTTACATTCTTTACTTTAACAATGAGGATCATGGAAAGTCTTTAACTTCAAAAGGGTCCTTAGAAAATCAAAGAAAGGAAACTAAACGGAATATTGAAGAGAATAAGAAGACTGATTCAATCACAAGATCTTCTCAACATAATAAAGATCACATAATTGCTGAGAGAAAGAGGAGACAAAATATTAGCCAACACTTCATAGCACTTTCAGCACTCATTCCGGGCTTAAAAAAGATGGATAAGGCTTCTGTATTGAGAGATGCTATAAAGCATGTGAAACAACTTCAAGAACAAGTGAAACTACTTGAAGAAAAGAACCAAAGGTTACAAAACGTAGAATATGTTGTTTATGTTGAGTCAAATTCTGGGAATGGTAAACGGTCACTGCCAGAAGTTGAGGCAAGAATGTCAGAAAAGAACGTGCTTATTAGAATCCATTGTGAGAAACAAAAGGGAGTGTTGGTGAACATAATCAAAGAGATTGAGAATCTCAATCTTTCTATCACTAGTGCTACTTCATTGCTATTTGGAACCACCAAATTACTAGACATCACAGTCATAGCTGAAATGGATGAGGAGTTCAGCTTATGCGTGCAGGAGCTAGTTAGAAACCTTCGAGTTTCATTCTTGCAATTCATGGAGTAG 756 0.3757 MSNSSGDVNNFERPSKTLKTNPSNTGYPSSQREDSSFPYILYFNNEDHGKSLTSKGSLENQRKETKRNIEENKKTDSITRSSQHNKDHIIAERKRRQNISQHFIALSALIPGLKKMDKASVLRDAIKHVKQLQEQVKLLEEKNQRLQNVEYVVYVESNSGNGKRSLPEVEARMSEKNVLIRIHCEKQKGVLVNIIKEIENLNLSITSATSLLFGTTKLLDITVIAEMDEEFSLCVQELVRNLRVSFLQFME 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00601 251 Coils Coil 55 75 - -
Car02g00601 251 PANTHER BHLH TRANSCRIPTION FACTOR 8 158 - -
Car02g00601 251 PANTHER BHLH TRANSCRIPTION FACTOR 162 247 - -
Car02g00601 251 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 8 158 - -
Car02g00601 251 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 162 247 - -
Car02g00601 251 Pfam Helix-loop-helix DNA-binding domain 88 133 IPR011598 GO:0046983
Car02g00601 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 132 IPR011598 GO:0046983
Car02g00601 251 Coils Coil 122 149 - -
Car02g00601 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 151 IPR036638 GO:0046983
Car02g00601 251 SMART finulus 89 138 IPR011598 GO:0046983
Car02g00601 251 MobiDBLite consensus disorder prediction 1 34 - -
Car02g00601 251 Gene3D - 80 153 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00601 Car-Chr2 7178353 7182269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00601 13 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.727 4.79e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car02g00601 HLH 8.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00601 - - cam:101506050 488.804