Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00592 ATGATCCGAACAACAAACGGGTCGGGTCGTCGGATATTAACATTTCCGGCGGTTCATCCCTGCGTGAACAttgctccttccactcttctctcttccctcatcactctctCCGACAGAATTGACAATTTCAAACACAAATTCTTCTCTTCCAACAAACGAAACGCGAAAAACGCTATTCGTTTGATCCAACTTTTCCAACCATTCTTCCATGAGATCCATGAAAATCATTCAAATCTTCCTTCTCCGGCGACCCTTTGTTTTTCTGAGCTATATTTCACCTTCCAGAAGCTTCTTTTCTTGATGGAAGATTTGACTCACGAAGGTGCTCGGTTGCTTATGTTGATGGAGTCGGGTCGGGTTGCAACAATGTTTCGGGTCTTGTTTAGATCCGTTGCAACTGCACTTGATGTTTTTCCTTTTGATTCCGTTGAGGTGTCTGTGGAAGCTAAAGAAGAGGTTTTGTTGTTGATGAAGCAAGCTAGGGAGGGAAGGTTTGATTTTGAGGATGATGATAAAGATCTAGTGATGTGTGTTAAGAATGTCTTGAACCTGTTTGAGAAAAGGGTTGCTCCCAATAAGTGTGATTTGAAGAGGGTTCTTGATTATATTGGGGTTTTGAAATGGAGTGAGAGTAATAAAGAGGTGAAATTTTTGGATTGTGAAATTGGGTTTGAGTGGTTGAATGAAGAAAAGAGAAAGGTGGGATTTTTAAGTAGTTTAATGGGTTTTATGAGTTATTGTAGATGTGTGGTGATGGAAGTTATGAATTGTGAAGAGGGTAAGGGAAATAAGAAAATTGATACAAGAAGAGAAAATGAGATGATTTTGAGTTGTGTCAATTCAGATGATTTTCTATGTCCAATCACTTTGGAGTTGATGAGTGATCCTGTGACTATAGAAACAGGTCACACTTATGATCGTTCTTCAATTCTCAAATGGTTCAGAAGTGGAAATGCAATATGTCCAAAGACAGGCATTCCTTTTGCTGATTCGGGTCGTCGGAATCACGACATTGCTAGGACGGTGCAGACAGGAAGTGATGCGGCCGAGGGAGCCATGAAGCTCTTGGCTGGTTTTCTTTGTGAAAGTCTTGAGAATGGAAATGTTGAACATAAGAATCATGCTGCATTTGAGATAAGGGTTCTTACCAAAACAAGCATTTTTAGTAGGTCTTGTTTGGTAGAAGCTGGTTCAGTTCCTCTTTTGTTGTTATTGTTGGCATCAAGTGATTCATCAGCACAAGAGAATTCTATTGCAGCCCTTTTAAACCTCTCAAAATACTCCAAGAGTAGAAGTGAGATGGTTGAAAATTGGGGACTAGAAATGATTGTTGGAGTCTTAAACAAAGGGGTAACGATTGAAGCTAAACAGCATGCTGCAGCAGTGTTGTTTTACCTTGCTACAAATGCTGATCATGGAAATTTAATAGGCCAAGAGCCAGAAGCAATTCCTTCACTGATCAATCTCATAAAAGACGGCACTGATCGAAGCATAAAGAATGGTTTGGTTGCAATTTTTGGCCTCCTTAGACACCATGAAAATCAGAAAAAGTTACTTGCTGCTGAAGCAATTCCTTTGTTAGTTAACATCTTAAAAGCAAGTGAAAAAGAAGACATTATCACTGACTCATTAGCAATTCTAGCAACTCTTGCAGAGAAAAGTGATGGAACAATGGAAATCCTTCAGTTTGGAGCTTTACATGTAGCTGTTGAAGTCATGAGTTCTTCCACTACTTCAAGATTCGGGAAAGAGCATTGTGTTTCTTTGTTGCTTTCACTATCAATAAATGGTGGAGAAAATGTGGTTGGTCATTTAGTGAAGCGTTCTTCACTTATGGAATCTTTATATTCACAACTAAGTGAAGGAACTTCTAGAGCAAGCAAAAAGGCAAGTGCTCTCATAAAGGTCCTCCATGATTTTTATGAAAGGAGATCCTCCGGCTACAAGGCATCAGTTATTCCACGTGAACAATCCATTCATGTATGGTAA 1989 0.3861 MIRTTNGSGRRILTFPAVHPCVNIAPSTLLSSLITLSDRIDNFKHKFFSSNKRNAKNAIRLIQLFQPFFHEIHENHSNLPSPATLCFSELYFTFQKLLFLMEDLTHEGARLLMLMESGRVATMFRVLFRSVATALDVFPFDSVEVSVEAKEEVLLLMKQAREGRFDFEDDDKDLVMCVKNVLNLFEKRVAPNKCDLKRVLDYIGVLKWSESNKEVKFLDCEIGFEWLNEEKRKVGFLSSLMGFMSYCRCVVMEVMNCEEGKGNKKIDTRRENEMILSCVNSDDFLCPITLELMSDPVTIETGHTYDRSSILKWFRSGNAICPKTGIPFADSGRRNHDIARTVQTGSDAAEGAMKLLAGFLCESLENGNVEHKNHAAFEIRVLTKTSIFSRSCLVEAGSVPLLLLLLASSDSSAQENSIAALLNLSKYSKSRSEMVENWGLEMIVGVLNKGVTIEAKQHAAAVLFYLATNADHGNLIGQEPEAIPSLINLIKDGTDRSIKNGLVAIFGLLRHHENQKKLLAAEAIPLLVNILKASEKEDIITDSLAILATLAEKSDGTMEILQFGALHVAVEVMSSSTTSRFGKEHCVSLLLSLSINGGENVVGHLVKRSSLMESLYSQLSEGTSRASKKASALIKVLHDFYERRSSGYKASVIPREQSIHVW 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00592 662 SUPERFAMILY ARM repeat 359 637 IPR016024 -
Car02g00592 662 Pfam U-box domain 282 325 IPR003613 GO:0004842|GO:0016567
Car02g00592 662 ProSiteProfiles U-box domain profile. 279 325 IPR003613 GO:0004842|GO:0016567
Car02g00592 662 PANTHER U BOX DOMAIN-CONTAINING 4 325 - -
Car02g00592 662 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 4 325 - -
Car02g00592 662 SUPERFAMILY RING/U-box 281 331 - -
Car02g00592 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 522 565 IPR000225 GO:0005515
Car02g00592 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 341 IPR013083 -
Car02g00592 662 PANTHER U BOX DOMAIN-CONTAINING 325 652 - -
Car02g00592 662 SMART arm_5 427 468 IPR000225 GO:0005515
Car02g00592 662 SMART arm_5 511 552 IPR000225 GO:0005515
Car02g00592 662 SMART arm_5 385 426 IPR000225 GO:0005515
Car02g00592 662 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 325 652 - -
Car02g00592 662 CDD RING-Ubox_PUB 284 325 IPR045210 -
Car02g00592 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 397 439 IPR000225 GO:0005515
Car02g00592 662 Gene3D - 342 645 IPR011989 -
Car02g00592 662 SMART Ubox_2 283 345 IPR003613 GO:0004842|GO:0016567
Car02g00592 662 Pfam Armadillo/beta-catenin-like repeat 390 425 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00592 Car-Chr2 7075720 7077786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00592 1 662 U-box Gene Family AT1G60190 43.123 9.31e-178 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00592 - - gmx:100795816 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00592 02 7075720 7077786 Car02g00592 02 7075720 7077786 ECH