Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00571 ATGAAGAAGGAAAGATCACCGCACCACCACCAACAGCTGTTTTGGGCAAGAGTGGTTATGCGTAAATGGCTTAACATTGGTACCAACGAATCtgattatagtgctgatcctgaagatgaagatgatgttgataatgacgacgatgatgattcagaaaatgaagAGTGGGGAAGAAAGTCACGGTTTATGGACAGAAGAGGTGGTGAAGCTCCATCTGAATCAAATGAACTTGTTCCGAGTTTAAGGAAACAGAAGTCGTCAACTTATAGATCTCAGTATATAAACACAAAGGAACTGAGGGTGTGTGCGGCGACATGGAATGTTGGTGGAAAACTTCCACCTGATGACCTAGATATTGATGAATGGCTTAATGTCAATGAGCCAGCTGACATCTATGTCCTCGGTCTTCAAGAGATCGTACCTCTAAATCCTGGTAATATTTTTGGTGCTGAAGATACTCGTCCTGTTCCAAAATGGGAGAATATTATTCGGGAAGCACTTAATAGAGCCCGACCTTCAGTAACGAAGACAAAATGCTTTAGCGACCCTCCATCTCCGTCAAAATTTAAGCCATCAGATGATGGCCCTGATATCGAAGAAGAAATATTATTCGAAAGTGATAGTGACATTGGTGAGGAAATCCATCCTTTGGATGAAGAACAAAATATTTGTGATAGAAGTACTACAGATGAAATCACGAACACAAGTTTATCGGCTTCCAATGTTGCTGATAATGCCAACTCCAGTGAGCCGATTGACAATGATTACAAAAGACAGTTTTCATTTCCAAAGAGGTTCAATTGGCCACAAAGTCCAACGGAAAAAATGGATGCATCATTTTCACAAAAGGCCAATAAACTAACCAGAATGCTTAGTGGATCTGAAAGAATCGGTTTGAGCTGGCCAGAGCCTCCACTACATCTGCTATCACAAAGAGTTTTGGAGAGACCAACTTCTTTTAAATCATTCAAATCCTTTAGGTCATTAAAATCATTCAAAACATATAATTCTTTTAAGTCATATATGGATGAAATGCCAGGAATGGGTTTGCTTCCTGAACTCGACCTTGAAGCTTTAATGAAGCGGAAAAGAAGATCTTCATATGTAAGGATTGTGAGCAAGCAGATGGTCGGAGTTTTTGTCACTGTATGGGTTCGTCGGAGCTTACGTAAACATATTCATAATTTAAAGGTTTCAACTGTAGGCGTTGGCATTATGGGCTATATTGGTAACAAAGGATCAATATCTGTCAGCATGTCCATATATCAAACACTTTTTTGTTTTATATGCTCGCATCTTACGTCCGGTGAAAGGGACGGAGACGAGCTTAAACGAAATGCTGATGTTCATGAAATTCTTCGCAGAACACAATTTCATTCACCTTCTTATATTGGACTTCCTAAAGGCATCCTTGATCACGAAAGAATAATTTGGTTGGGTGATTTAAATTACCGTATCAACTTACCAGATGTGGAAACAAAAGCTCTTATCTCAAAAAAGCAGTGGTCAAAGTTGGCCGAGAAAGATCAGCTCATGCGTGAACTCAAGAACGGCGCATTTGGAGGATGGTCAGAAGGGATGTTAAACTTCCCACCAACTTATAAATATGAGGTTAATTCAGACAAGTACTACGGAGAAGACCCCAAGGCTCCAAAGCGTACACCAGCATGTGCAATGGCTTCTTCCTTGGATATGTCACTTGATGATAGAATTAAGAACAGGAGTAACAGAGGCAGAGGACGTGGCAGAGCCCGTTCGGGGCGTGGAAGTGGGACTCTTGGTGGTGGAAGAATAACTGGTGCTGTTAATGGTAGAAGACTGACTGGTCCTGGTAACGGTGGAAGAACAACTGGTGCTGTTTGCAGAGGTCCACTTATGGTCAACACTCACCCATCATCTTTTGCTATTGCCAAGTCTTTTCGCAGATCCAAGCCTTTCCGGATGCAGAATGATTTGTTTGAGGATAGCCTTAGAGCTGCAGGAATTCAAGGAGTAGAAGCCGACACAAAGTTGTATGTTTCCAACTTGGACCGTGGAGTAACCAATGAAGATATAAGGGAATTTTTCTCTGAGCTTGGAGACTTGAAGCGCTATGCTGTTCATTATGACAAAAATGGACACCCAATTGGTTCAACTGAAGTAGTCGGCTCCTTTGAATGGTGTGGTTGCCACACTGAACCCGAACTTCATTACGACGTCGTTGTATTTGGAGAATATGGCACCATTACTAGTGCTGTTTTGATGAGAGATGCAGACGGTAGGTCAAAGTGTTTTGGTTTTGTCAATTTCGAAAATCCAGACAATGCTGCTAATGCTGTGGAGACATTGAATGGAAAGAAATTTGACAAAAAGCAGTGTAAAGGATCAGGATTTGTCGCATTGTATTCATTGACCTCCTTGTTTGCAAATTTTGGGCCAAATGTTACCACATTTGTTGTGTCGGCAGAGATTTTTCCTGCTAGATTTCGATCTACTTGCCATGGAATATCATCAGCAACGGGGAAACTCGGGGCTATAGTTAGTGCATTTGGGTTTTTGTGTTTGGCACAAAACAAGGACAAGCGTAAAGCATATGCATGGTACCGAACAGAGGTGTTGATGAATTCTCCTTTCAGGTGTGATCGTATACTTTCATATGGCAAGGGGATGAGGGTACTGAGTTACAGAAGAACTGAGCTCAAAATGTCAGATCACAGACCCGTGACAGCAACATATACCGTCGAGCTGCTTAATTTGAACAGGGATTTTTTACAGAGATTAAGTATGTCCAGAATTTCAATTTCAAGGAGCAACAGCGATAGCTGCTGCAACTTCTAA 2817 0.4058 MKKERSPHHHQQLFWARVVMRKWLNIGTNESDYSADPEDEDDVDNDDDDDSENEEWGRKSRFMDRRGGEAPSESNELVPSLRKQKSSTYRSQYINTKELRVCAATWNVGGKLPPDDLDIDEWLNVNEPADIYVLGLQEIVPLNPGNIFGAEDTRPVPKWENIIREALNRARPSVTKTKCFSDPPSPSKFKPSDDGPDIEEEILFESDSDIGEEIHPLDEEQNICDRSTTDEITNTSLSASNVADNANSSEPIDNDYKRQFSFPKRFNWPQSPTEKMDASFSQKANKLTRMLSGSERIGLSWPEPPLHLLSQRVLERPTSFKSFKSFRSLKSFKTYNSFKSYMDEMPGMGLLPELDLEALMKRKRRSSYVRIVSKQMVGVFVTVWVRRSLRKHIHNLKVSTVGVGIMGYIGNKGSISVSMSIYQTLFCFICSHLTSGERDGDELKRNADVHEILRRTQFHSPSYIGLPKGILDHERIIWLGDLNYRINLPDVETKALISKKQWSKLAEKDQLMRELKNGAFGGWSEGMLNFPPTYKYEVNSDKYYGEDPKAPKRTPACAMASSLDMSLDDRIKNRSNRGRGRGRARSGRGSGTLGGGRITGAVNGRRLTGPGNGGRTTGAVCRGPLMVNTHPSSFAIAKSFRRSKPFRMQNDLFEDSLRAAGIQGVEADTKLYVSNLDRGVTNEDIREFFSELGDLKRYAVHYDKNGHPIGSTEVVGSFEWCGCHTEPELHYDVVVFGEYGTITSAVLMRDADGRSKCFGFVNFENPDNAANAVETLNGKKFDKKQCKGSGFVALYSLTSLFANFGPNVTTFVVSAEIFPARFRSTCHGISSATGKLGAIVSAFGFLCLAQNKDKRKAYAWYRTEVLMNSPFRCDRILSYGKGMRVLSYRRTELKMSDHRPVTATYTVELLNLNRDFLQRLSMSRISISRSNSDSCCNF 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00571 938 SUPERFAMILY DNase I-like 858 914 IPR036691 -
Car02g00571 938 SUPERFAMILY RNA-binding domain, RBD 735 787 IPR035979 GO:0003676
Car02g00571 938 SMART rrm1_1 670 789 IPR000504 GO:0003723
Car02g00571 938 SMART i5p_5 276 581 IPR000300 GO:0016791|GO:0046856
Car02g00571 938 MobiDBLite consensus disorder prediction 54 71 - -
Car02g00571 938 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 671 706 IPR000504 GO:0003723
Car02g00571 938 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 735 786 IPR000504 GO:0003723
Car02g00571 938 Gene3D Endonuclease/exonuclease/phosphatase 331 575 IPR036691 -
Car02g00571 938 Gene3D Endonuclease/exonuclease/phosphatase 78 182 IPR036691 -
Car02g00571 938 Gene3D MFS general substrate transporter like domains 778 866 IPR036259 -
Car02g00571 938 MobiDBLite consensus disorder prediction 28 84 - -
Car02g00571 938 PANTHER TYPE I INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE 13 556 - -
Car02g00571 938 SUPERFAMILY MFS general substrate transporter 792 851 IPR036259 -
Car02g00571 938 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 669 785 IPR000504 GO:0003723
Car02g00571 938 MobiDBLite consensus disorder prediction 174 197 - -
Car02g00571 938 Gene3D - 724 777 IPR012677 -
Car02g00571 938 SUPERFAMILY DNase I-like 80 547 IPR036691 -
Car02g00571 938 MobiDBLite consensus disorder prediction 33 53 - -
Car02g00571 938 Gene3D - 662 718 IPR012677 -
Car02g00571 938 SUPERFAMILY RNA-binding domain, RBD 663 710 IPR035979 GO:0003676
Car02g00571 938 MobiDBLite consensus disorder prediction 570 618 - -
Car02g00571 938 PANTHER TYPE I INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE 866 919 - -
Car02g00571 938 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 866 919 IPR045849 GO:0004445|GO:0046855
Car02g00571 938 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 13 556 IPR045849 GO:0004445|GO:0046855
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00571 Car-Chr2 6827088 6840818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00571 790 861 Inorganic Solute Cotransporters AT2G38940 77.778 5.68e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00571 - - gmx:100811025 831.247