LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car02g00567	ATGTTTGGTTTACAATCATCTTCAATTTGGAACCTAACCCCAAAACCCCAAATAAACAAATTGAAGCGCTTCTCAAACCTCACCACAACAATGGCGGGAAGAAGAACTCTCTTCAACCTCTCTTCTTCCTTTTCTCTTCACCCTAACCGTTTCCCATTCCTCACTTCACTTTCCAAACCTACCATCCTTCTTCCACCACGATTCAGATTCAGACCTCTCTCTTCCATCACCTTATCTCCCGAAGAATCACTACACTCTGACCAACCTAAACACTCCATTCTCTTAGAGAAGCTCAGAATAAGACACATCAAAGACGCCGTCAAAACCACCGTTGAAGTTGTTAAGAAGAATCAGAAACCAGAGGAGGTGGTGAAGAAGAAGAAGGTTGTTGTGGATGTTGGGAGTTTTAAGGAATTGGGATTAAGTGATGAAGTTATGGGTGCTGTTAGAGAATTAGGTATTGAAGTTCCTACTGAGATTCAGTGTATTGGTGTTCCTTCTGTCTTGGATGGGAAAAGTGTTGTTTTAGGCTCTCATACTGGTTCTGGAAAAACTCTTGCTTACTTGCTTCCACTTGTTCAGTTGCTAAGACAGGATGAGCAATTGAATGGAATACTGTTGAAGCCCAAGCGTCCCAGAGCTGTTGTGCTATGTCCTACAAGGGAGTTGTCTGAGCAGGTTTTTCGAGTTGCGAAATCAATAAGCCATCATGCAAGATTCAGGTGTACCATGGTAAGTGGTGGTGGCCGTCTTAGGCCTCAGGAGGATTCTCTTAGTAACCCCATCGATATGGTAGTAGGCACCCCTGGCAGGATCCTTCAACATATTGAGGAGGGAAATATGGTATACGGTGACATCAAATACGTGGTATTAGATGAGGCAGACACGATGTTTGATCGGGGTTTTGGTCCTGATATACGCAAATTTCTGGGCCCATTAAACCGTCGGGCTTCGAAACCTGATAGCGCAGGCTTCCAGACTATTTTGGTCACTGCAACCATGACAAAGGCTGTGCAAACTCTGGTTGATGAGGAGTTTCAAGGCATTGTACATCTGCGGACATCCACATTACATAAAAAGATTTCTTCTGCTCGTCATGATTTTATTAAACTTTCTGGTTCTGAGAACAAGATGGATTCATTACTTCAGGTATTAGAGCCAAGTCTTGCAAAGGGTAACAGAGTAATGGTTTTCTGCAACACATTGAATTCTAGCCGTGCTGTGGATCACTTCCTTGGTGAAAATCAGATTTTTACCGTGAATTACCATGGGGAGGTACCAGCAGAGCAAAGAGTCGAAAATCTCAAAAAGTTTAAGAGTGACAGTGAAGATTGCCCAACATTGGTTTGCACTGACTTGGCTGCTAGGGGTCTGGATTTGGATGTAGATCATGTTATCATGTTTGACTTCCCTTTGAATTCTATCGATTACCTCCATCGCACAGGTAGAACTGCTCGTATGGGCGCAAAAGGGAAAGTAACGAGTTTGGTTACAAAAAAGGACAGCAGCTTGGCCAACAAAATAGAGGAGGCGATAAGAAAGAACGAGAGTTTGGAGGCTATCACTAAAGAAAGTGTCCGAATAGACGTAACAAGGAACCAAATCACTGAACAGAGGAGAAAAAACAAAAATGTGGTGGTTAAAGCTTCAAAAGTTAGGGAGAAAAAATCTGATCCTCGCGCCAGTTCAACAAATACCAGGTCAGGTGTGAAATCTGGTAAACAATCACCACCAGCAAAGTCTACTACAAAGAAAGGGTTTACCATTACAAAATCTGTAAAATCCTCCAGTACAAGTAGCTTCAGAAAAGCTTCTTTGGATAATAAGCGAACAAGTAAAAGGACCTCTGAAAAATCTTCCAGTACAAGTAGCTTCAGAAAAGCTTCTTCGGACAATAAGCGAACAAGTAAAAGGACCACCACCACCAAATCTACAAATTCTAAACTTAGTGTTGTAGGGTTTAGGGGGCGGAATGCATCATCAAATAGGAGACAAACATCTTAG	2004	0.4237	MFGLQSSSIWNLTPKPQINKLKRFSNLTTTMAGRRTLFNLSSSFSLHPNRFPFLTSLSKPTILLPPRFRFRPLSSITLSPEESLHSDQPKHSILLEKLRIRHIKDAVKTTVEVVKKNQKPEEVVKKKKVVVDVGSFKELGLSDEVMGAVRELGIEVPTEIQCIGVPSVLDGKSVVLGSHTGSGKTLAYLLPLVQLLRQDEQLNGILLKPKRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLSNPIDMVVGTPGRILQHIEEGNMVYGDIKYVVLDEADTMFDRGFGPDIRKFLGPLNRRASKPDSAGFQTILVTATMTKAVQTLVDEEFQGIVHLRTSTLHKKISSARHDFIKLSGSENKMDSLLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQIFTVNYHGEVPAEQRVENLKKFKSDSEDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVTKKDSSLANKIEEAIRKNESLEAITKESVRIDVTRNQITEQRRKNKNVVVKASKVREKKSDPRASSTNTRSGVKSGKQSPPAKSTTKKGFTITKSVKSSSTSSFRKASLDNKRTSKRTSEKSSSTSSFRKASSDNKRTSKRTTTTKSTNSKLSVVGFRGRNASSNRRQTS	667

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car02g00567	667	MobiDBLite	consensus disorder prediction	639	667	-	-
	Car02g00567	667	CDD	DEADc	145	344	-	-
	Car02g00567	667	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 39	64	564	-	-
	Car02g00567	667	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	134	162	IPR014014	GO:0003724
	Car02g00567	667	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	377	529	IPR001650	-
	Car02g00567	667	MobiDBLite	consensus disorder prediction	539	561	-	-
	Car02g00567	667	MobiDBLite	consensus disorder prediction	539	667	-	-
	Car02g00567	667	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	64	564	-	-
	Car02g00567	667	CDD	SF2_C_DEAD	365	497	-	-
	Car02g00567	667	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	165	352	IPR014001	-
	Car02g00567	667	Gene3D	-	362	577	IPR027417	-
	Car02g00567	667	Pfam	Helicase conserved C-terminal domain	377	488	IPR001650	-
	Car02g00567	667	Pfam	DEAD/DEAH box helicase	158	340	IPR011545	GO:0003676\|GO:0005524
	Car02g00567	667	SMART	helicmild6	406	488	IPR001650	-
	Car02g00567	667	MobiDBLite	consensus disorder prediction	562	605	-	-
	Car02g00567	667	Gene3D	-	97	353	IPR027417	-
	Car02g00567	667	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	166	500	IPR027417	-
	Car02g00567	667	SMART	ultradead3	153	372	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car02g00567	Car-Chr2	6785325	6791794	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car02g00567	133	510	Eukaryotic Initiation Factors Gene Family	AT3G19760	28.756	1.49e-40	151

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car02g00567	-		-	mtr:MTR_6g039840	838.18