Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00566 ATGAGAAGAACAAGAAGAGTAAGAGAGCTTCTGAGCCTCTCTTTTTCTTCTCTACGCAACAACTCTCAATTTCATCACAAACCACCACACACTTCTTCATCAATAACTTTCTCAACATCATCTTCCAATAACTCCCAAAGGGATTCACTACTTCTCCAACATTTCACTCAAAGAAAAATCAAGGGTTCCTCCTCAAAGGTTAACCAACATGTTTCAACTTCACTTCCATCATCACGTTTTGATGATACTACTAATTTTGCTCACAAATTAGTCCCAAACACTAATAATAATGATTCTATGGTGGTTTCCAGTTTTAAGGAGTTGGGTTTGAGTGATGTCATTGTTGAGGTTATGGAAGAGATTGGTGATTTTGTTCCAAGTGAGATACAGTGTGTTGTTATTCCATCTATTTTGGAAGGGAAGAGTTTGTTGTTGAGTTCACCTTCTTTGAATGATAGGACATTGGCTTACTTCTTGCCCCTTATTCAGCTGCTAAGACGGGATAGAGAGTTGCTTGGTTCGATTTCAAAGCATCCTCGAGCTGTCTGCTTTAATGCTGCAGGATATATTATCCATAATGCAGAATTGAAGTCTGCAAAGAATTGTGCTTCATCTGATAACGAAAATATATTCTGGGAAATAAAACAAAAATGGTTGCAAATTGTAGCATATTTTGATTTTAATACATCGGAGAAGAAAAATATATTAATTGAATATAACAAAATGGTAATGGATGAAGTGGATTCCATGCTTGGTGGCAACCTTGGTCCTGAAATCCATGAAATTATCAAACAACTACAAAATCATGAATCAAAATCCAGTTTCAAAAGATTGCAAACAATTTTGGCAATTTCCACTATAGCTGAGGTTTTGGGTGAAAATTCCCCGCTTGTAAAACGTCTTGAGCGTGATCATGCTGGAAATATTTCTGCATTGTCTTTAGAAATGGAGCAAAGTGAAGTTTTTCATTTGACAGAGTCTTTTGATGCTCTTAGGACAAAATTGGAGGAGGCCATGAATTCCCTTTAG 1029 0.3644 MRRTRRVRELLSLSFSSLRNNSQFHHKPPHTSSSITFSTSSSNNSQRDSLLLQHFTQRKIKGSSSKVNQHVSTSLPSSRFDDTTNFAHKLVPNTNNNDSMVVSSFKELGLSDVIVEVMEEIGDFVPSEIQCVVIPSILEGKSLLLSSPSLNDRTLAYFLPLIQLLRRDRELLGSISKHPRAVCFNAAGYIIHNAELKSAKNCASSDNENIFWEIKQKWLQIVAYFDFNTSEKKNILIEYNKMVMDEVDSMLGGNLGPEIHEIIKQLQNHESKSSFKRLQTILAISTIAEVLGENSPLVKRLERDHAGNISALSLEMEQSEVFHLTESFDALRTKLEEAMNSL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00566 342 SUPERFAMILY PABC (PABP) domain 289 340 IPR036053 GO:0003723
Car02g00566 342 SMART poly_2 283 342 IPR002004 GO:0003723
Car02g00566 342 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 134 305 IPR014001 -
Car02g00566 342 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 231 342 IPR002004 GO:0003723
Car02g00566 342 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 103 131 IPR014014 GO:0003724
Car02g00566 342 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 22 342 - -
Car02g00566 342 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 22 342 - -
Car02g00566 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 283 IPR027417 -
Car02g00566 342 MobiDBLite consensus disorder prediction 21 42 - -
Car02g00566 342 Pfam Poly-adenylate binding protein, unique domain 296 340 IPR002004 GO:0003723
Car02g00566 342 Gene3D - 51 184 IPR027417 -
Car02g00566 342 Gene3D - 271 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00566 Car-Chr2 6778864 6782389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00566 248 342 Eukaryotic Initiation Factors Gene Family AT2G23350 35.354 5.18e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00566 - - vra:106768009 315.464