Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00543 ATGTCCTTATTAACGGTGGCGAATCAACGAGGTTTAGGTGAGTTCACCGGATTCACGGTGAAGCGTGGCGGCGATGGTGGTAGTTCTAGTGGTGCATCTCAATCATTTAATGACTTGAAGAACCAAGAAGAAGAAGGGGGTGTGAGAAGTAGAATGCAGGGGTATAATGGTGATAGAGAATTAATAGAAATGGTTTCAGCTCTTACACATGTTTCATCTAGTCAAATGATGGTACAAACAATTGGTCACAAAAGAGAACGTGATCATGATGAAGAGATTAGTAGTTCTTCAAATCATATTATACAACAACCAACACTTCCTAGAATCTTTACAACTGTTATGGTACCTTCTCAAACATCAGTGGGTTCAGAAGGTCCAAGCAGCATAGGTGGTTCGACGGCAACATCGGCGACAACGGAAGAAGGCGGCGAAAAAAGGAGAAGATACAGAGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCAGCAGAAATAAGAGATCCACACAAAGCAGCAAGAGTATGGCTTGGAACATTTGACACAGCTGAAGCAGCTGCAATTGCTTATGATGAAGCTGCATTGAGGTTTAGAGGGAGTAGGGCAAAGCTCAACTTCCCTGAAAATGTTAGAGCAATAccgactccgactctgactacgactacgacaccTCAGCCGCAGCTGCGATCGCATTCGACAGCTTTTTCGCCGTTTAATGGACAGCCAGACTTAGTAAGAGACTATTTGGAATATTCTCAGATTCTTCAAAGTTCTGGTGACTTTCAATTacaacaacaacaacaacaaTCTAATTTATTCCAACAATGGTATTATAATTCACAATTGGCTCAACTTCAAtcaccttcattgttgttatcgtcgtcgtcgttgtcgtcgtcatcttcattttcaACCTCCACTCAACTTTCCTCTTCATCTGATTCATTTCCTCTATTTAATAGTCAAGAAATGAGTTTTTTACGGCCGTCGAATAACCATCCGCCTGGTGGAAGCCGTGGCGGCGGATTAGGGTTTCCGCCGACAACTTGGTCAGATATTAGTGGTTGTCCACCACCTTATGGTTGA 1080 0.3889 MSLLTVANQRGLGEFTGFTVKRGGDGGSSSGASQSFNDLKNQEEEGGVRSRMQGYNGDRELIEMVSALTHVSSSQMMVQTIGHKRERDHDEEISSSSNHIIQQPTLPRIFTTVMVPSQTSVGSEGPSSIGGSTATSATTEEGGEKRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAAIAYDEAALRFRGSRAKLNFPENVRAIPTPTLTTTTTPQPQLRSHSTAFSPFNGQPDLVRDYLEYSQILQSSGDFQLQQQQQQSNLFQQWYYNSQLAQLQSPSLLLSSSSLSSSSSFSTSTQLSSSSDSFPLFNSQEMSFLRPSNNHPPGGSRGGGLGFPPTTWSDISGCPPPYG 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00543 359 MobiDBLite consensus disorder prediction 212 235 - -
Car02g00543 359 MobiDBLite consensus disorder prediction 26 41 - -
Car02g00543 359 MobiDBLite consensus disorder prediction 118 150 - -
Car02g00543 359 Pfam AP2 domain 148 197 IPR001471 GO:0003700|GO:0006355
Car02g00543 359 ProSiteProfiles AP2/ERF domain profile. 148 205 IPR001471 GO:0003700|GO:0006355
Car02g00543 359 SUPERFAMILY DNA-binding domain 148 206 IPR016177 GO:0003677
Car02g00543 359 SMART rav1_2 148 211 IPR001471 GO:0003700|GO:0006355
Car02g00543 359 PANTHER DNA-BINDING DOMAIN 67 322 IPR044808 GO:0003700|GO:0009873
Car02g00543 359 MobiDBLite consensus disorder prediction 16 52 - -
Car02g00543 359 PRINTS Ethylene responsive element binding protein signature 149 160 IPR001471 GO:0003700|GO:0006355
Car02g00543 359 PRINTS Ethylene responsive element binding protein signature 171 187 IPR001471 GO:0003700|GO:0006355
Car02g00543 359 Gene3D AP2/ERF domain 147 207 IPR036955 GO:0003700|GO:0006355
Car02g00543 359 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 67 322 - -
Car02g00543 359 MobiDBLite consensus disorder prediction 118 139 - -
Car02g00543 359 CDD AP2 156 207 IPR001471 GO:0003700|GO:0006355
Car02g00543 359 MobiDBLite consensus disorder prediction 322 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00543 Car-Chr2 6497842 6499840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00543 126 213 AP2-EREBP Transcription Factor Family AT2G33710 67.045 1.38e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Car02g00543 AP2 4.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00543 - - cam:101490540 565.074