Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00536 ATGCCGTCTTTAGTTGATGATCAAGCTGAATTGCTTCGAAAGAAACTTGACATTCATGTGAAGGGAGTTGTAATGGCACCGGTTTTGTCATTCACTTCCTGTAGCCTCCCTGAAAAACTCCTGCACAACATAGAAGCAGCAGGATATGAGATGCCTACACCTGTCCAAATGCAAGCAATCCCTGCTGCTTTGATGGGAAAGAACATGCTTGTTTTGGCCGATACAGGATCTGGAAAGTCTGCTTCATTTCTAATTCCAATAGTTTCTCGTTGTGCAACTCATCGTTTCACTTATGTTTCAGATAAGAAAAAGCCTTTAGCTATGGTGTTAACGCCTACGAGAGAGCTTTGTATACAGGTTGAAGAGCATGCAAAATTGCTTGGAAAAGGATTGCCATTTAAAACTGCACTAGTGGTTGGTGGTGATGCCATGGCTAGGCAACTCTATCGTATTCAACAAGGAGTGGAATTGATTGTGGGAACACCAGGAAGGCTTGTTGATCTTTTAATGAAGCATGAGATTGATTTAGATGACATAACCACATTTGTTGTCGATGAGGTGGATTGCATGCTGCAACGGGGTTTTCGAGAACAAGTCTTGCAGATATTTACGGCTTTGTCACAACCTCAGGTTTTAATGTATTCTGCAACAATGTCTGATGGTTTAGAGAAGATGGCAAACTCTCTGGCAAAAGATATGGCGGTTATAACCGTCGGGGAACCTAACAAACCAAATAAGGCTGTGAAGCAGCTAGCTATTTGGGTTGAGTCTAAGCAAAAGAAGCAGAAGCTATTTGACATTTTAACAAGTCAGAAACATTTTAAGCCGCCTGTTGTAATATATGTCGGCTCCAGACTTGGGGCCGATCTCCTGGCAAATGCAATTACAGTTGTGACAGGAGTTAATGCTGTTTCAATTCACGGCGAGAAGTCTATGACTGAAAGGAGAGAAATAATGCAGTCCTTTATGGTGGGTGAGTTCCCAGTGGTTGTGGCTACCGGAGTTTTGGGTAGGGGGGTTGATCTATTGGGTGTAAGACAAGTAATTGTATTCGACATGCCTAATTCCATCAAGGAATATGTACATCAAATAGGAAGGGCTTCTAGAATGGGAGAGGAAGGTCAAGCTATAGTTTTTGTGAATGACGAGAATAAGAATGTTTTTGCAGAATTAGTTGATGTACTAAGGTCTGGTCAAGCGGCCTTCAGGACAGCGAGGTGGAGGGCTCTGTTGGCAGGGGTAGTTGCTGGGCAGTCGATGCTTCTGACAGGGTTAGAGGCACAGCACACAAGTTTGGCCATTTACATTCTCATGCGTGCTTCTGTTTTGGCATCTCGTTGTGGGATTAAGAGCAAAAGGTTCCGGAGAATTTGTAAGCCTCTCACATGGAAGCATGGAGACATTTTCCTCATGTGTCTATCTTCTTCCCAAATATTAATAAGACATACTATTGACAACACGAGTAGAAGCAGCTAG 1476 0.4302 MPSLVDDQAELLRKKLDIHVKGVVMAPVLSFTSCSLPEKLLHNIEAAGYEMPTPVQMQAIPAALMGKNMLVLADTGSGKSASFLIPIVSRCATHRFTYVSDKKKPLAMVLTPTRELCIQVEEHAKLLGKGLPFKTALVVGGDAMARQLYRIQQGVELIVGTPGRLVDLLMKHEIDLDDITTFVVDEVDCMLQRGFREQVLQIFTALSQPQVLMYSATMSDGLEKMANSLAKDMAVITVGEPNKPNKAVKQLAIWVESKQKKQKLFDILTSQKHFKPPVVIYVGSRLGADLLANAITVVTGVNAVSIHGEKSMTERREIMQSFMVGEFPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIVFVNDENKNVFAELVDVLRSGQAAFRTARWRALLAGVVAGQSMLLTGLEAQHTSLAIYILMRASVLASRCGIKSKRFRRICKPLTWKHGDIFLMCLSSSQILIRHTIDNTSRSS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00536 491 Gene3D - 3 240 IPR027417 -
Car02g00536 491 SMART ultradead3 48 251 IPR014001 -
Car02g00536 491 Gene3D - 242 406 IPR027417 -
Car02g00536 491 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 20 402 - -
Car02g00536 491 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 60 236 IPR014001 -
Car02g00536 491 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 20 402 - -
Car02g00536 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 238 IPR027417 -
Car02g00536 491 Pfam Helicase conserved C-terminal domain 261 371 IPR001650 -
Car02g00536 491 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 247 410 IPR001650 -
Car02g00536 491 Pfam DEAD/DEAH box helicase 53 224 IPR011545 GO:0003676|GO:0005524
Car02g00536 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 385 IPR027417 -
Car02g00536 491 SMART helicmild6 289 371 IPR001650 -
Car02g00536 491 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 29 57 IPR014014 GO:0003724
Car02g00536 491 CDD SF2_C_DEAD 248 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00536 Car-Chr2 6415659 6418680 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00536 1 389 Eukaryotic Initiation Factors Gene Family AT3G13920 31.378 6.16e-51 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00536 K19466 - gmx:100784491 660.603