Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00531 ATGGATGAACCTATTGTGTTGAACAAAGTTGATGAATCTCTTGATTTGCCTCCTGGTTTCAGATTCCACCCTACTGATGATGAAATCATTACTTGTTATTTGATTAACAAAGTGTTGAATAGTAATTTTAGTGCAACTGCAATTGGTGAAGCTGATTTGAATAAGTGTGAACCTTGGGACTTACCTAAGATGGCAAAGATGGGAGAGAAAGATTGGTATTTCTTTTGCCAAAGAGATAGAAAGTATCCAACTGGAACAAGAACTAATAGAGCAACTGAATCAGGGTATTGGAAAGCAACTGGAAAAGATAAAGAGATCTACAAAGGGAAAAGTAACCAACTTGTTGGAATGAAGAAAACTCTTGTGTTCTATAAAGGTAGAGCTCCAAAGGGAGAGAAAACCAATTGGGTTATGCATGAATTTAGATTGGATGGCAAATTTGCAACTTGCAATCTTCCTAAGGATTCAAAGGATGAATGGGTTGTATCAAGGATTTTCAACAAGAGCAACACAGAGATTAAAAAGAATTCATTTTCCAATCTTTTGAGGATAAATTCATTAAGTGATGATCTATTGGATTTTTCTTCACTACCACCTCTTGTGGATCCACCTTTTAGCAACACTATCAATTCGCCACCTTCATCATCCTCTAAACCGCCACCAAATGGTAATTATTTTCCAAGTTACTTAATCAACAACAATATTCAAAATCAAATTCCATCATATAACATTGCCACCAACCAAGAGAATACATTTTCTCatcaacctcaaaatcaaatccaaattcaaaattcaaGCTCTCAATTGCAACAAAACATGTTATCAAATTATTCTTATAATATGCAACAAGGGAATCACAACAATACTTATATTTATGGATTGGACAACAAAGAGTGCAAGATGGAACAATTCTCTACCAACAATTCTATGGTAAGTGTTTCACAAGACACATGTTTGAGCAATGACATAAACACTGACACATCTTCAGTGGTCTCAAAGCAAGAAATTGGAAGGAATACAACATTGTATGAGGATTTTGAGTGTCCTTCATCAATTGGTCCTCTCTCAAATTTTGAATCTTTGTGGAATGACTATTGA 1098 0.3388 MDEPIVLNKVDESLDLPPGFRFHPTDDEIITCYLINKVLNSNFSATAIGEADLNKCEPWDLPKMAKMGEKDWYFFCQRDRKYPTGTRTNRATESGYWKATGKDKEIYKGKSNQLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLDGKFATCNLPKDSKDEWVVSRIFNKSNTEIKKNSFSNLLRINSLSDDLLDFSSLPPLVDPPFSNTINSPPSSSSKPPPNGNYFPSYLINNNIQNQIPSYNIATNQENTFSHQPQNQIQIQNSSSQLQQNMLSNYSYNMQQGNHNNTYIYGLDNKECKMEQFSTNNSMVSVSQDTCLSNDINTDTSSVVSKQEIGRNTTLYEDFECPSSIGPLSNFESLWNDY 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00531 365 SUPERFAMILY NAC domain 12 168 IPR036093 GO:0003677|GO:0006355
Car02g00531 365 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Car02g00531 365 ProSiteProfiles NAC domain profile. 16 168 IPR003441 GO:0003677|GO:0006355
Car02g00531 365 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 330 - -
Car02g00531 365 MobiDBLite consensus disorder prediction 205 228 - -
Car02g00531 365 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 7 330 - -
Car02g00531 365 Gene3D NAC domain 25 173 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00531 Car-Chr2 6343292 6345689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00531 1 337 NAC Transcription Factor Family AT5G18270 54.108 2.49e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car02g00531 NAM 8.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00531 - - cam:101514407 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01762 03 63485625 63487073 Car02g00531 02 6343292 6345689 PCT