Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00510 ATGAACGATCTTCTAACGGAATCGTTTGATATCCCCCGTGGCCAAGGTCATCGAGGTGGTGACATTGAGTTGGGAGAATATGCAAGGAATTCAGGAGAGCTGGGCTTGGATACTTTCTTCAAAAAGGTTCAAGAGCTTGATAAACAATATGCTAAGCTGGATAGTCTTTTGAGAAAGCTCCAGGGTGCCCATGAGGAGTCCAAAGCTGTTACCAAAGCTCCTGCCATGAAGGCTATAAAGCAGAGAATGGAGAAAGATGTCGATGAAGTTAAGAAAACTGCACATTACCTAAAGACCAAAGTTGAAGAACTCGACAAAGAGAATTTGGCTAATAGGCAGAAGCCTGGTTGTGGAAAAGGATCAGCTGTTGACCGGTCAAGAACAGCAACGACAATTTCCTTGAAAAAGAAATTGAAGGACAAGATTGCTGAATTTCAGACCCTAAGAGAATCCATCCATGAAGAATATCGTGAGGTTGTTGAGAGACGTGTATTTACAGTAACGGGCACGAGAGCTGACGAGGAGACAATTGACAGATTAATTGAGACTGGAGACAGTGAACAAATTTTCCAGAAGGCGATTCAGGAACAAGGGCGTGGCCAGATAGTGGACACCCTTGCAGAAATTCACGAACGACACGAAGCAGTCAGAGATGTTGAGAAGAAGCTGCTCGATTTACAACAGATATTCATGGATATTGCAGTGTTAGTTGATGCACAAGGAGACATGCTTGACAACATAGAATCAATGGTTTCAAGTGCAGCAGATCATATACAGCAAGGCAATAATACCCTCCACAAAGCAAAGAAACTGCAAAGAAACTCTAGAAAATGGATGTGCATTGCCATCATGATACTTCTAATCGTCGTTATAATCATCGTTGTTTCCGTCATCAAACCATGGGTTAATAACAACGGCGCTTAA 924 0.4253 MNDLLTESFDIPRGQGHRGGDIELGEYARNSGELGLDTFFKKVQELDKQYAKLDSLLRKLQGAHEESKAVTKAPAMKAIKQRMEKDVDEVKKTAHYLKTKVEELDKENLANRQKPGCGKGSAVDRSRTATTISLKKKLKDKIAEFQTLRESIHEEYREVVERRVFTVTGTRADEETIDRLIETGDSEQIFQKAIQEQGRGQIVDTLAEIHERHEAVRDVEKKLLDLQQIFMDIAVLVDAQGDMLDNIESMVSSAADHIQQGNNTLHKAKKLQRNSRKWMCIAIMILLIVVIIIVVSVIKPWVNNNGA 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00510 307 PANTHER SYNTAXIN 3 299 IPR045242 -
Car02g00510 307 Pfam Syntaxin 39 241 IPR006011 GO:0016020
Car02g00510 307 SMART tSNARE_6 201 268 IPR000727 -
Car02g00510 307 Gene3D - 36 164 - -
Car02g00510 307 Coils Coil 135 155 - -
Car02g00510 307 SMART SynN_4 31 157 IPR006011 GO:0016020
Car02g00510 307 Coils Coil 87 107 - -
Car02g00510 307 CDD SynN 36 193 IPR006011 GO:0016020
Car02g00510 307 Pfam SNARE domain 242 294 IPR000727 -
Car02g00510 307 SUPERFAMILY t-snare proteins 35 261 IPR010989 GO:0016020|GO:0016192
Car02g00510 307 Gene3D - 199 299 - -
Car02g00510 307 Coils Coil 43 66 - -
Car02g00510 307 CDD SNARE_syntaxin1-like 205 267 - -
Car02g00510 307 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car02g00510 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Car02g00510 307 PANTHER - 3 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00510 Car-Chr2 5983618 5989595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00510 1 307 SNARE and Associated Proteins AT3G03800 73.290 1.39e-159 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00510 K08486 - gmx:100306329 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00510 02 5983618 5989595 Car04g00977 04 9829511 9835557 PCT