Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00479 ATGGTGTTTTGTGATCACTGTTTGAAAAACGGTCCTGGATTGCGATCTGATGATGGTCCCTTATGTTGTGCTGATTGTGGGAAGGTGTTGGAAGATTACAATTTTGCTGAGGAGCCAAGCTTTACGAAAAATGCTGCTGGACAGAGCAGAGTATCGGGAAATTATGTTAAATCGATTCAAGCTGAGTTCTCTGCTTCACGCGAAAGGACTTTAGCGAGAGCTTTCGAAGAGATGAAATATATGAGTTACGGCCTCGGAGTGGATGATGATAGTTTAGCTACACAAGCTTTGGCCTATTATACAATAGGACTAGAGCGAAATTTTACCAAGGGGCGTAAATCAGAGCAAGTACAGGCTTCTTGTCTCTATATTGCATTCCGGGAAAAGCAAAAGCCATACCTACTTATTGATTTTTCAAATTTTTTAAGGACAAATGTTTATGTGCTTGGCGCAGTATTTTTGCAGCTTTGTAAAGTATTAAGGCTTGCAGATCACCCATTTCTTCAAAAGCTTGTTGATCCCAGTCTTTTTATTTACAAATATACGAATAGTTTGTTGAAGCAAAGGAATGTGCAGGTCTCTGAAACTGCACTGAATATTATTGCCAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAGCCTAGCGGATTATGTGGTGCAGCATTGTACGTGGCTGCTCTTGCACATGGTTTTCAGTGCTCTAAGTCAGATATTCTAAGAATTGTCCATGTATGTGAAGCAACATTGTCCAAACGGCTGGTAGAGTTTGAGAATACCGAGTCTTCCAGCTTGACAATTGATGAGTTGAATGCAATGGCAAAAGAGCATGAAAACGATCCAATTAAAATACCAAATGGTGAACTGAACAACTGTACCTCAAAGGATCTACTGTGTGAACACAAGGGTAGTATTGGAGTGCCCTATTTTGCACTTGGATTATGTGAAACGTGTTACAGGGATTTCGACAAACTCTCCGGTGGACTTGATGGTGGTTCAAATCCTCCAGCATTTCAGCGTGCTGAGAGGGATAGAATAATGAAGTCACATTCCAAGGAAAATCCTAATAAATCAGATGATttgGCAAAGGATTCAAATGGTGCATGCGAGAGCCAAATAGAGTTACATGCCTTTGAGCCTGAAAGTATTGGGGATGAAGAAGAATGTGTAGCCACTAAAAATGGCGAGCACAATAAGTCAAATAGAGAAGATGATATGAACGCAAAAGCTGTTGATGAATCAGAAAGTCTCTCTGATATTGATGATAAGGAGATTGTTGTCTACCTTCACAATGAGGAGGAAACAGAACGTAAGAAGATTATATGGGAATATAATAATCGAGAGTATCTTGAGGAACAAGCTGCCAAGGAAGCAGAGGCTGCAATGAAAAATGATGCGAATTTCCAAAACTGTTCAGCTGAAAGAGAATTTTGTGCATCAATTACCGATGCTGTGGCAAAATCCAGAAAGGAAATGAAGCAGAGGCGAGCTCAAGAGGCAAAAAGTTTGGGTCCTGCTCAATCTGCTGCAGAGGCCACTCGGCGAATGTTGACAGCAAAGAGGCTCAGCTCCAAACTCAATTTTGATCGCTTGGATAAGTTATTTGCTGAACCTCAGGCAGCTCCAGAGAATCTCAAGAAAGCGCGAGTTCAGTTACCCTCTGACAATGACGATAATTTGGAGTTGAAGTCAGAGGCCAAAAGAATGGAGGAGGATGAATTGGGATTGGTTGACAAATTTGCAGATGGTGATATGGATGGAGAATATGATAATACTTCGTATCCAGAAAATGCGTATGAGACATATGACTATGAGGACGATGGTTATGGCTATGATGGTTTTTAG 1845 0.4114 MVFCDHCLKNGPGLRSDDGPLCCADCGKVLEDYNFAEEPSFTKNAAGQSRVSGNYVKSIQAEFSASRERTLARAFEEMKYMSYGLGVDDDSLATQALAYYTIGLERNFTKGRKSEQVQASCLYIAFREKQKPYLLIDFSNFLRTNVYVLGAVFLQLCKVLRLADHPFLQKLVDPSLFIYKYTNSLLKQRNVQVSETALNIIASMKRDWMQTGRKPSGLCGAALYVAALAHGFQCSKSDILRIVHVCEATLSKRLVEFENTESSSLTIDELNAMAKEHENDPIKIPNGELNNCTSKDLLCEHKGSIGVPYFALGLCETCYRDFDKLSGGLDGGSNPPAFQRAERDRIMKSHSKENPNKSDDLAKDSNGACESQIELHAFEPESIGDEEECVATKNGEHNKSNREDDMNAKAVDESESLSDIDDKEIVVYLHNEEETERKKIIWEYNNREYLEEQAAKEAEAAMKNDANFQNCSAEREFCASITDAVAKSRKEMKQRRAQEAKSLGPAQSAAEATRRMLTAKRLSSKLNFDRLDKLFAEPQAAPENLKKARVQLPSDNDDNLELKSEAKRMEEDELGLVDKFADGDMDGEYDNTSYPENAYETYDYEDDGYGYDGF 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00479 614 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 539 IPR000812 GO:0006352|GO:0070897
Car02g00479 614 SUPERFAMILY Cyclin-like 171 262 IPR036915 -
Car02g00479 614 CDD CYCLIN 85 143 IPR013763 -
Car02g00479 614 Gene3D Single helix bin 392 460 - -
Car02g00479 614 SUPERFAMILY Cyclin-like 74 162 IPR036915 -
Car02g00479 614 CDD CYCLIN 173 248 IPR013763 -
Car02g00479 614 Pfam Brf1-like TBP-binding domain 418 535 IPR011665 -
Car02g00479 614 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Car02g00479 614 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Car02g00479 614 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 539 IPR029529 GO:0000126|GO:0000995|GO:0006383
Car02g00479 614 Gene3D - 64 164 - -
Car02g00479 614 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Car02g00479 614 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Car02g00479 614 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Car02g00479 614 Gene3D - 173 264 - -
Car02g00479 614 SMART cyclin_7 176 259 IPR013763 -
Car02g00479 614 SMART cyclin_7 76 158 IPR013763 -
Car02g00479 614 MobiDBLite consensus disorder prediction 578 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00479 Car-Chr2 5636541 5652386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00479 1 520 Inorganic Solute Cotransporters AT2G01280 41.399 7.16e-110 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00479 K15196 - gmx:100789154 714.146