Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00473 ATGAGTTCACTAAATTTGAACATTGATAATGGTTTCTCTTTGGACTTGAAAGTTTCACCTTCATCTCATGTTCCTTCTTCATCTAATACTTCACTTATGGGTCATGCTAATGAAACAGAGTCTGAAAAGACTGAAATACCCTTTGAAATTTTGAACCCTTTAGTGATCAATCCTAAGGAAAAAATGATTACAAACAAACAAGGGGATGAAGGGTATTTTGGGAATGAGAAAAATAACTTACCTTTGAACGTTGGTGAGGAGGAAAATGAAGCAAAAAATAGTTCTTTGGCCATTGAGAAAATTGGGAACACTAAGCTTAGTATTAGAGGTCATTGGAGACCAAATGAAGATGCTAAGCTCATTGAAGTTGTTGGAAAATTGGGTCCTCAAAATTGGAACAACATTGCTCAACATCTACATGGAAGATCAGGGAAAAGTTGTAGATTAAGGTGGTGTAATCAACTAGATCCTAAACTTAACAGAGGAGTATTCAGTGAGGAAGAAGAGGAGAAACTTTTGGCAGCACATAAAATTTATGGTAACAAATGGGCATTAATTTGCAAACTATTTCCTGGAAGGACAGACAATGCAGTCAAAAATCATTGGCATGTGCTCATGGCTAGGAGGCTAAGGAATCAATCATCAACTTCTTCTAAAATGAAAAAGTCAACATTTCAAATTTCTTCAAATATTTTGATGAATATGAATTTGACAAACTATAATGTGGCTAGTGAATCAACCATCTCAAGTACCATTGATGAATCTAATTCAACTTGCACCAATCTCAACCTCATTACTATGCCTAATTTTCATAACAATCATGCTTTGCCTAATTTCCAAACCTATGGTTCTCAAATAGGTTTACTTGGAGAAAGAAATGTAGCTGCAAGGGATAATGGTTTTGACAAGTTTTTCAGTGCTTCCACCAAAGGTTCATGTGATTGTCACATGGGAAAGCTTAAGATTATGGACAAATCCAATTATTCAGATTCAATCTCAGAAGTTTCAATATCTCAGTCAGTTGCAACCAACAAGACCAATGTATCAATTTTGGGGGAAAGTGAAAATGTGAAGGATAAGATTAAAAGGTCATTTATTGACTTTCTAGGAGTTGGTGAAACATAG 1125 0.3502 MSSLNLNIDNGFSLDLKVSPSSHVPSSSNTSLMGHANETESEKTEIPFEILNPLVINPKEKMITNKQGDEGYFGNEKNNLPLNVGEEENEAKNSSLAIEKIGNTKLSIRGHWRPNEDAKLIEVVGKLGPQNWNNIAQHLHGRSGKSCRLRWCNQLDPKLNRGVFSEEEEEKLLAAHKIYGNKWALICKLFPGRTDNAVKNHWHVLMARRLRNQSSTSSKMKKSTFQISSNILMNMNLTNYNVASESTISSTIDESNSTCTNLNLITMPNFHNNHALPNFQTYGSQIGLLGERNVAARDNGFDKFFSASTKGSCDCHMGKLKIMDKSNYSDSISEVSISQSVATNKTNVSILGESENVKDKIKRSFIDFLGVGET 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00473 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 155 IPR017930 -
Car02g00473 374 SMART sant 108 157 IPR001005 -
Car02g00473 374 SMART sant 160 208 IPR001005 -
Car02g00473 374 Gene3D - 163 230 - -
Car02g00473 374 PANTHER MYB PROTEIN-RELATED 37 374 - -
Car02g00473 374 PANTHER OS08G0435700 PROTEIN 37 374 - -
Car02g00473 374 MobiDBLite consensus disorder prediction 18 43 - -
Car02g00473 374 CDD SANT 112 153 IPR001005 -
Car02g00473 374 ProSiteProfiles Myb-like domain profile. 109 155 IPR001005 -
Car02g00473 374 Gene3D - 108 160 - -
Car02g00473 374 CDD SANT 171 206 IPR001005 -
Car02g00473 374 ProSiteProfiles Myb-like domain profile. 156 206 IPR001005 -
Car02g00473 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 156 210 IPR017930 -
Car02g00473 374 MobiDBLite consensus disorder prediction 18 37 - -
Car02g00473 374 Pfam Myb-like DNA-binding domain 161 205 IPR001005 -
Car02g00473 374 Pfam Myb-like DNA-binding domain 109 155 IPR001005 -
Car02g00473 374 SUPERFAMILY Homeodomain-like 108 202 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00473 Car-Chr2 5550120 5552297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00473 63 251 MYB Transcription Factor Family AT1G69560 48.958 1.36e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car02g00473 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00473 K09422 - jre:109000849 303.138