Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00469 ATGGTTTACCCAAATAAAGGTGCGAGCACCGCTGAAGCAGCTGAGAACTCAAATAATGGAGAGAGATCTGCGCACAAACGTCTGAGTCGTATTCAAACAACCATGCTTGAAAAATTCATGGAAGAATGTCCCCATCCAGATGAGGCCCAACGGACTCAATTTGCTGAGCAGGTTGGGCTTGAGCCCAAACAAATCAGGTTTTGGTTTCAGAACAAGAGAACTTTATTGAAGAATCAAGAAAAGCGAGTAAGTAACAGTGCTCTTCGCAATGAGAATGATATGCTTCAAAATGAAAACAACCTTATCAATGAGGCACTCAAGTCCACAATTTGCTCAACTTGTGGGGGCCCACCATTTCCCCAAAAAGAACATGAACTTTTCATGAAAAAAATGGGAGAGGAAAATGATCAGCTGAAACAAGAGATTGAGAAAGTTTCAACCCTTATTTCAAGGTACAAAAGAAAAGAGATATCACTACCTGAATTAGAGTTATCTCTTGCTCATGTAAAAACATTTTCACATAGCCAAATGGTTAGTGGAAGTTCAAGTCATAGTCACAATCATAGTATCCGAGTGAATCAACCAATGCAAAATTGTGATGTTGAAAAATCAATGATAACTCAAATTGCAACAATTGCAATGGAAGAGTTAATTAGGCTTGTTAGGATGAATGAACCTTTTTGGGTCAACTCTTCTACTACACAAGATGCGAAGTTAACCCTAATTCATGAAGCTTATGAGCAAGTTTTTCCTAAGAAAAGTCACTTCAAAGGTCCCAATATTGTTAAAGAAGCATCAAAATATTCAGCCATGGTCAACCTTAGTGGCATGATATTAGTTGACATTTTTCTTGACCCGGTGAAATGGGCAAAGTTGTTTCCAACAATGGTGAAAAAATGTGAAACAATCAAAGTGTTTGAAACAGGGGTGTTGGAAAATGGAGATATATCACTCCAATTGATGTATGAAAAAATGCACATTTTGTCACCTCTAGTGCGACCTCGTGAATTTAACATAATTCGATATTGCAAACAAATTGGTGTTGGAACATGGATGATAGCAAATGTGTCATATGATTCCTCTCAACCAAACACTAATCATCACTCTCATGCTTGGAAATATCCATCTGGTTGCATGATTCGTCAATTGCCTAATGGCACTTGTGTGGTTACTTGGGTTGAACATGTGGAAGTGAATGATGAGATCCATACACATCATTTATATAAAGATCTTATTGGTACACATAATTTATATGGAGCAGAAAGTTGGATTAAAGAACTTCAGAGAATGTGTGAGAAAACTTATAGTTTCTTCCTTCCAAGGATCCCTGATCATGAATCTGGAGGAGTGATCGAAACAATTGAAGGGAGAAAAAGTGTGATGAGGCTTTCTCATAGAATGGTTAGGATGTTTTGTGAATGTCTAACAACACAAAGTAATGTGGAATTTCCAAGTACAATTCAAGATAGCATTGGTGGGATTAGGGTTTCTTTTCAAGACATCACTTCTTCAGGCCAGCCAAATGGAAAGGGTGTTGTTGCTATTGCCACCCTTTGGACTCCTTTACCATCTGATAAAGTTTTTGAGTTCCTCATTGATCCTACTAAACGATCAAAGTGGGATGTTCTTGCTTATGGAAATCGAGTGCATGAGATTGCACACATTTCAAATGGATATCATCATGGAAACTTCATTTCCCTTTTGAAGCCTTTCATCCCTAGTGAGAAAAATGTATTGATTCTTCAAGAAAATTTCACATCACATGTGGGATCATATGTTATATTTGCTGGAATTGATATTGCATCTATGAATGTGGCCATAAGGGGTGAAGACACTGTAAAAATGCATATTCTTCCTTCAGGTTTTGTTGTGTGTCCAAATGATCAAAAATCAAATGCAACTAATTCGGAAGGATTCAAAGGTGGTTCTTTGTTGACTCTGGCTTACGAGATTTTGTCTTGTAGTTCAGAGAGAACCACCAACCTAACAAATGTTGAAAGTGCGGCTAATGCCAGAACCTTATTGACAACTACTCTTGAAAATGTGAAGAAAGCTCTAATGAACTATAATCGCCGTTGA 2079 0.3761 MVYPNKGASTAEAAENSNNGERSAHKRLSRIQTTMLEKFMEECPHPDEAQRTQFAEQVGLEPKQIRFWFQNKRTLLKNQEKRVSNSALRNENDMLQNENNLINEALKSTICSTCGGPPFPQKEHELFMKKMGEENDQLKQEIEKVSTLISRYKRKEISLPELELSLAHVKTFSHSQMVSGSSSHSHNHSIRVNQPMQNCDVEKSMITQIATIAMEELIRLVRMNEPFWVNSSTTQDAKLTLIHEAYEQVFPKKSHFKGPNIVKEASKYSAMVNLSGMILVDIFLDPVKWAKLFPTMVKKCETIKVFETGVLENGDISLQLMYEKMHILSPLVRPREFNIIRYCKQIGVGTWMIANVSYDSSQPNTNHHSHAWKYPSGCMIRQLPNGTCVVTWVEHVEVNDEIHTHHLYKDLIGTHNLYGAESWIKELQRMCEKTYSFFLPRIPDHESGGVIETIEGRKSVMRLSHRMVRMFCECLTTQSNVEFPSTIQDSIGGIRVSFQDITSSGQPNGKGVVAIATLWTPLPSDKVFEFLIDPTKRSKWDVLAYGNRVHEIAHISNGYHHGNFISLLKPFIPSEKNVLILQENFTSHVGSYVIFAGIDIASMNVAIRGEDTVKMHILPSGFVVCPNDQKSNATNSEGFKGGSLLTLAYEILSCSSERTTNLTNVESAANARTLLTTTLENVKKALMNYNRR 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00469 692 CDD START_ArGLABRA2_like 203 432 - -
Car02g00469 692 ProSitePatterns 'Homeobox' domain signature. 54 77 IPR017970 GO:0000981|GO:0006355
Car02g00469 692 CDD homeodomain 22 80 IPR001356 GO:0003677
Car02g00469 692 SUPERFAMILY Homeodomain-like 16 84 IPR009057 -
Car02g00469 692 Gene3D - 207 415 IPR023393 -
Car02g00469 692 ProSiteProfiles 'Homeobox' domain profile. 19 79 IPR001356 GO:0003677
Car02g00469 692 SMART START_1 208 433 IPR002913 GO:0008289
Car02g00469 692 Gene3D - 15 87 - -
Car02g00469 692 ProSiteProfiles START domain profile. 199 436 IPR002913 GO:0008289
Car02g00469 692 SUPERFAMILY Bet v1-like 200 433 - -
Car02g00469 692 MobiDBLite consensus disorder prediction 1 26 - -
Car02g00469 692 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 17 688 - -
Car02g00469 692 Pfam Homeodomain 26 77 IPR001356 GO:0003677
Car02g00469 692 SUPERFAMILY Bet v1-like 456 630 - -
Car02g00469 692 Coils Coil 128 155 - -
Car02g00469 692 Coils Coil 78 108 - -
Car02g00469 692 Pfam START domain 211 433 IPR002913 GO:0008289
Car02g00469 692 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 688 IPR042160 -
Car02g00469 692 SMART HOX_1 21 83 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00469 Car-Chr2 5509085 5514724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00469 21 686 Homeobox Transcription Factor Family AT1G73360 38.571 4.89e-162 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car02g00469 START 6.3e-31 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00469 K09338 - gmx:100795075 667.922