Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00380 ATGTCGACGTCGGCGTTTGATGCTCTGATGTCGGGCGCACGGGCTGCCGCCGCTAAGAAGAAACATCCGCCGGAGCATACATCAGACAAGAAAAGGAAAGCCTCAGAGTTGCAGTCTGTTGTTCACTCCCAAAATCCTTCTAACAGCGCCGAACTGAAGGAGCGGATTTTACGTCTGAAGAAGAAGCCTTCGGAGTTTGATCCCATCACGGTTGCTTGGTGGGAGAAGGGTGAACCTGTTCCGTTTCTGTTCCTCTCTTTGGCATTTGATATGATCAGTGAAGAGAGTAGCAGGATTACAATGACGGACATTGTGTGCAACCTTTTGAGGTCTGTCATTTACGCTACCCCTGAGGATCTCTTGCCTGTCGTTTATCTATCTGCAAATAGAATCGCTCCACCACACGAAGGGTTGGAATTGGGAATCGGTAAAGCTTCCATTATCAAGGCGCTTGCTGAAGCCTGTGGTAGAACTGAGAAGCATATTACCCAGCACTATAAGGATTTAGGTGACTTGGGCTTAGTTGTCAAAGCTAGTCGTTTGGCTCAGTCTATGCTGCGGAAGCCTGCTGCATTGACTATTACTAAAGTTTTCAACACCTTTCGTCTTATTGCTAAGGAATCTGGAAAAGACAGTCGAGAGAAGAAAAAGAATCATATAAAGTCACTTCTTCTTGCAGCAACTGACTGTGAACCTTTGTATCTAATCCGTTTGCTACAGAAAGAGTTGCGGATTGGATATGCTGAGAAAACTCTCTTATCTGCAttgggacaagcagcagtgtactctgaagaacattctaaaccgcctcctgaaattcagtctcctttagaagagGCTGCAGAAATCGTTAAACAAGTATATTCTGTTCTCCCTGATTATGAAAAAATAGTATGTGCACTGCTTAAGGATGGTGTATGGCAGCTTCCAAAGACATGCAATTTTACTCCTGGTGTTCCAGTTGGGCCTATGCTGTCAAAACCAATCACCAGTGTATCCGAAGCTGTAAATAAGTTCAAGGACGTAGGGTTCACGTGTGAATACAAATACGATGGAGAGCGTGCTCAGATACATTACATGGAGAATGGCTCAGTTGAGATTTACAGTAGAAATGCAGAAAGGAACACTGACAAATTTCCTGATGTTGCAGCTGCAGTTTCAAGGTTAAAGAAAAGAACAGTATCATCATTTGTTCTTGATTGTGAAATTGTTGCATATGACCGTACAAAACAGAAAATCCTTCCTTTACAGGTGCTTAGTACCCGGGCTCGCAAAAATGTAGCTGTGAGTGATATAAAGGTTGATGTATGCATATTTGCTTTTGATTTGTTGTATCTTAATGGCCAAGCACTACTTCAGGAAAACCTGAAAATTCGTAGAGAGCATCTTTATGCTTCATTTGAGGAGGAATCTGGATTTCTTCAGTTTGCAACATCAATGACATCAAATAATGCTGAGGAAATGCAAAAGTTTCTTGACGAAGCTGTGGATGCAAGTTGTGAGGGATTGATTATTAAAACATTAAATAAAGATGCTACATATGAACCTTCCCAGCGGTCACTCAACTGGCTAAAACTGAAGAAAGATTATTTGAAAAAGATAGGGGACACACTAGATTTGGTACCTATTGGTGCTTTCCACGGTCGTGGGCAACGTGCAGGAGTCTATGGTGCCTTTCTCCTTGCTTGCTATGACAACGATAAGGAAGAATTTCAAACTATTTGTAAGACAGGAACTGGATTCTCTGAAGAAGAGCTTGATGAAAGTTTTGCTAGCCTCGGCTCTAAAATGATTCCAAAACCAAAGGCATACTATAGACATGCAGAGAAAATCAAACCTGATGTCTGGTTTGAAGCCACTGAGGTGTGGGAGGTGAAAGCTTCAGACCTCACCAACAGCCGCGTTTACCAAGCTGCAATGGGCTTAGTATATTCAGATAAGGGCATATCTCTTCGATGTCCACGTCTAATTCGAGTTCGGCATGACAAAGCTCCTGAGCAGGCCTCGTCGTCTGAAATGGTTGCTGAAATGTATCGTGCTCAAAAACAGAACCATCCCGAACAAATGGAAGACAACAATTGA 2082 0.4131 MSTSAFDALMSGARAAAAKKKHPPEHTSDKKRKASELQSVVHSQNPSNSAELKERILRLKKKPSEFDPITVAWWEKGEPVPFLFLSLAFDMISEESSRITMTDIVCNLLRSVIYATPEDLLPVVYLSANRIAPPHEGLELGIGKASIIKALAEACGRTEKHITQHYKDLGDLGLVVKASRLAQSMLRKPAALTITKVFNTFRLIAKESGKDSREKKKNHIKSLLLAATDCEPLYLIRLLQKELRIGYAEKTLLSALGQAAVYSEEHSKPPPEIQSPLEEAAEIVKQVYSVLPDYEKIVCALLKDGVWQLPKTCNFTPGVPVGPMLSKPITSVSEAVNKFKDVGFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTDKFPDVAAAVSRLKKRTVSSFVLDCEIVAYDRTKQKILPLQVLSTRARKNVAVSDIKVDVCIFAFDLLYLNGQALLQENLKIRREHLYASFEEESGFLQFATSMTSNNAEEMQKFLDEAVDASCEGLIIKTLNKDATYEPSQRSLNWLKLKKDYLKKIGDTLDLVPIGAFHGRGQRAGVYGAFLLACYDNDKEEFQTICKTGTGFSEEELDESFASLGSKMIPKPKAYYRHAEKIKPDVWFEATEVWEVKASDLTNSRVYQAAMGLVYSDKGISLRCPRLIRVRHDKAPEQASSSEMVAEMYRAQKQNHPEQMEDNN 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00380 693 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 19 690 - -
Car02g00380 693 Pfam ATP dependent DNA ligase C terminal region 552 663 IPR012309 GO:0003910|GO:0006281|GO:0006310
Car02g00380 693 ProSiteProfiles ATP-dependent DNA ligase family profile. 429 565 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Car02g00380 693 Pfam ATP dependent DNA ligase domain 323 527 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Car02g00380 693 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 63 314 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Car02g00380 693 Gene3D - 333 531 - -
Car02g00380 693 Gene3D - 532 692 IPR012340 -
Car02g00380 693 ProSitePatterns ATP-dependent DNA ligase signature 2. 501 527 IPR016059 GO:0003909
Car02g00380 693 Gene3D - 58 325 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Car02g00380 693 PANTHER DNA LIGASE 1 19 690 - -
Car02g00380 693 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 315 532 - -
Car02g00380 693 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 139 679 IPR000977 GO:0003910|GO:0005524|GO:0071897
Car02g00380 693 CDD Adenylation_DNA_ligase_I_Euk 312 523 - -
Car02g00380 693 MobiDBLite consensus disorder prediction 1 49 - -
Car02g00380 693 MobiDBLite consensus disorder prediction 18 37 - -
Car02g00380 693 Pfam DNA ligase N terminus 81 256 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Car02g00380 693 Gene3D DNA ligase/mRNA capping enzyme 352 477 - -
Car02g00380 693 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 347 355 IPR016059 GO:0003909
Car02g00380 693 CDD OBF_DNA_ligase_I 535 680 - -
Car02g00380 693 SUPERFAMILY Nucleic acid-binding proteins 535 681 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00380 Car-Chr2 4273348 4281816 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00380 4 686 Core DNA Replication Machinery Family AT1G08130 64.110 0.0 962
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00380 K10747 - gmx:100783155 996.497