Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00375 ATGGGTCGTGGAAGAATATCTATGGAACTGATTCAAAAGGAGAAATCTAGAAAGACAACATTTCAAAAGAGAAAGAATGGATTATTGAAAAAAGTGAATGAATTTTCCATTCTTTGTGATGTTGATGTTTGTGTAATTCTTTATGCACCCAACTTTGAAGGACAAGGATATGCTGAACCTGAAACATGGCCCAAAGATAAAAAAGAGGTACAAAGAATTCTTCAAAAATATTTTAATACAACAATCGACAGACGTCCTAAGATCTACGATGTTCAAGAATATTTCAAAGAAAGAATGAAAAAAGTCGAATTCGAGATATCGAAAGTTCGCAAAGAGATGTTAAAGATCATGTATCCAACTTGGGATGAATCTTTCAATTCTCTTAGTGAGGAACAATTGAGGTTATTTGCTAGCATTTTAGATTCTAAGCTTGATGCTTGTAATCAAAAGATGAATATGCTACAAGGAGATGTTAAGGGAAAAGCTAAAGTTGAATCAAACAAAGTTGAAAAACCTATTGCTCCTTATTTGGCTTCAAATTCAAGTAACTACTACAATCTCATGCAAAACAACATGCCTCAAGCACAAATTTTCCATCCATTGATTAATATTAGTGATAAAAACAACTTAGCGTTTTGGCAATTTCAAACGGGACAAAGCTCTCAATCTTCTCCTATGTTTGTCAATGCACAAGGCTCATACCAAGGCGAATCGTCTGATGAAGGTAGATATATGCAATCTTATCCGTGGAAGCAGGTTGATGCTAATTCAATTAATTGGGCCAACCAAGTTGATGGTAATGTTATCTATGATTCCAAATTTGATATGAAAAATAAGGATGAAGCTGAAAATGATCAAAACTTGTCACCATACTACTACAATGGAAATACACTAGCAATGCAATCATATCCTATTGCTATGCAAAATATTCCTTTCCAAAATTTTCAAAACCAACCACAAGGATTTCAATTTAATGGATACAGTGATATGGATATTCTTCAAGCTCATATGTTGAACTACATGGATGGAAGGAAGTAG 1038 0.3362 MGRGRISMELIQKEKSRKTTFQKRKNGLLKKVNEFSILCDVDVCVILYAPNFEGQGYAEPETWPKDKKEVQRILQKYFNTTIDRRPKIYDVQEYFKERMKKVEFEISKVRKEMLKIMYPTWDESFNSLSEEQLRLFASILDSKLDACNQKMNMLQGDVKGKAKVESNKVEKPIAPYLASNSSNYYNLMQNNMPQAQIFHPLINISDKNNLAFWQFQTGQSSQSSPMFVNAQGSYQGESSDEGRYMQSYPWKQVDANSINWANQVDGNVIYDSKFDMKNKDEAENDQNLSPYYYNGNTLAMQSYPIAMQNIPFQNFQNQPQGFQFNGYSDMDILQAHMLNYMDGRK 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00375 345 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 247 - -
Car02g00375 345 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car02g00375 345 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car02g00375 345 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car02g00375 345 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Car02g00375 345 SUPERFAMILY SRF-like 2 99 IPR036879 GO:0003677|GO:0046983
Car02g00375 345 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car02g00375 345 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Car02g00375 345 PANTHER MADS BOX PROTEIN 3 247 - -
Car02g00375 345 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car02g00375 345 CDD MADS 2 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00375 Car-Chr2 4191234 4196118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00375 1 240 Type I MADS-box Gene Family AT5G55690 31.746 4.06e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car02g00375 SRF-TF 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00375 - - mtr:MTR_1g114730 443.736