Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00347 ATGAATCAAGTAGGGTTCTCCACAAACTGGCGTAATCATCCGAGAATCATATACAACCGCAAATGGATAAGAAATGAAATTTCAAAAATGATCAGGACTTTTCCAATTGATAATAAGCGACTTGCACCTATCCTAGAATACTTTCTATTTTTATCCGCTACTTCAAAGGAGGATTACATGAACAATGTAACGTTAAATCAGCGTGTGCAATTTCTACTGGATGCTGGTATCGCTGATTATAATGGCATGCCAAAAGAGGGACCATCGACCTCTTCTATTGTTCACGAGCAGCTGCCTTGTTTGCGTGACCATGGTTCATCAATCCCAACATTTGCTGATATGAATGTTCTCTGTGACAACCCTGTTTCGGGCGGTGGAAGCTATTTTCCTCAGCAACATGCAAATAATTTGGACATGGATACGACAAGATACAGTGAAAATATAGGGACTATCCAGAATAATAATTCTATAAATTTTCCTACAACAAAAGGAAAATCCGTCCAATCTGAAAATTTAAATATGAAGTTACCTCAAATTGTCGCGGCGAATATTTCAGAACATTCCAATCGCTTTCCTCAGCAACATGCAAATAATTTGAACATGGATTTGACAAGATACAGTGGAAGTATGGGGAATATCCAGAATAATGATTCTATAAGTTTTCCTACAACAATAGGAAAATCCCTCAAATCTGAAGATTTGAATATGAAGTTACCTCAACTTGTTTCGATGGATATTTCGGAACATTCCAATCTTTTACCTCAACAACATTCAAATAATTTCGAGACAGATTTGACAAATAATAGAGATTGCTTGGAGATGATTATGCAGAATAATGAGTGTATGAGTTTTCCTAACATGACGCCAAGCTTCAAATTGAATTTTCAGAAGAATTTCACTCATGATGGTAATACTGAAGCCATGCTAAGACCTACCAAAATACAGAAAACAACGGGGTCTACTTTTGGCGTCTCTTTAGTTAACAATGCAAGTGCGGACCAATTGTCTTACAAGACGGTTCAACCTCATTCTATTGAAACACTTGTGGGAGTGCAGCAACAACAGTTAGAATTTCCCTTCTCATCTATCGATGGTGAAGTTGATAAGTACAGTGTGGAAGAGTTCACAAATCTAGTTCTTGGCATTAATGAGATAAACAGCAATGTGATGGTTGATACGTTTGGACAAACTTTAAAGACTAACACATTTCCCTCTAAAGGCTTAGAAGTTGCTCCTGAAAGGCAAGATGTGATGAATAGCAACAACTTAAATGAATTTGACATTGGATTGAGTTCCATTATGCGTACTGTCAGTATGGATGCTATTCCTACTGATGGAGGGGATATAAAAGGCAGAAATGAATTCGACCAGGCTGAGACAAATGTTAAAAAGAAAGTTATTGAGCCAAAACCCGATCAAGAGCTGCAAAAGTTATTGAGTACAATTGTTGGGGAGATACAGAACAATGTGAGTGATGATACATTTGGACAGACTTTCAAGAGTGAAATGATTCGCTCAAAAGGCTTAGATGCTAGTCCGGTGTTTGAGGAGCCAGATCCCGAAATCCATGGTGTGATTGACATTGGATTCAACCAAGAGGCGGCAAATGCTAAAAATAAAGCGAGTGAGCCAAAGGCTGATCAAGAGAAGCAAACAAAGTCCTCAAATACAACAATTAATGTTGTTTCCTTGATTGATTTGTTCACACGTGATCAAATAAAAGAACATATTAATAGTCTGAGAAAGGAATCCGTTCAGAAGACAACAGTGGACGGCACATGCCAATTATGTACAATGAAAGCTTTCTACTTCGAACCAGTACAAATTTATTGCTTACATTGTCAAACCCGTATCAAGCGAAACGCAAAGTATTTCTGTATAAAAGGAGAAGAATCTGATGCAGAGCGTTGCTTTTGCTCCTCCTGCTATAACCGTTCTAAAGGCGGGTGCATTATATTCAATGGGACATCTGTTTGTAAGACACTTTTTGAACAAAAGAAAAATGATGAAGTACTTGAAGAACCATGGGTTGAATGCAATAAATGTGAAAGATGGCAGCATCAAATATGTGCACTATATAACAGCAAAAGAGATTTGGACTGCACTGCTGAGTATACATGTCCTTTTTGCCACGTAAAAGAAATTGAAAATGGAATGCATGTTCCCTTACCAAAGACTACTATTTTTGGTGCTAAGGACTTGCCGAGAACCATGCTTAGTGACCACTTAGAGAAAAGACTTTTTGAGCATCTCATGCAAGAGAGAGCAGACTGGGAAAAAATCGAAGGGAATGAGAATCTTGATGAAGTTGTAGTAGCGAAAAGTCTTACAGTTAGAGAAGTGTTATCTGCTGACAAACATTTGATAGTGGAGAAGCAATTTCTGGACATTGTTCCAGAGGAGAAATACCCTGCTGAGTTCTCTTATAGATCAAGAGTTATTCTTCTGTTTCAGCAGATTGAAGGAGCAGATGTATGCATTTTTGGAATGTACGTCCAGGAGTATGGCTCGGAATGTGCCAATCCGAATCAACGTTGCATATATATTTCATATCTTGATTCTGTCAATCATTTTATGCCTCGAAGACAAACTATGAGCGGAGGAGCTCTTCGTACCTTTGTTTACCATGAGATATTGATTGGGTATCTTGATTTTTGTAAGAAACGAGGTTTTACAAAATGCTATATATGGTCTTGTCCTCCTAAAAAAGAGGATAATTATATTCTACATTGCCATCCAAAAACTCAAAAGACTCCAAAGGATGATAAGCTAGTGGACTGGTATCATTCAATGCTGAAAAAGGCTACTGAAGAAAATGTCGTCGTTGGTTTAACCGACGTGTATGAACATTTCTTTGTTCCTACTGAAAAATGGAACTCCAAGGTGACAGCTGCTCGTTTGCCATACTTCTATGGAGACTACTGGTGTAATCATGCTATGGAACTAGCCATCGACATTGAAAAAGAGTGTGGAGGAGAGTATGAAAAGACATTGAAGAAAGTAGTGAAAAATAGATCTTTAAAGGCCATGGGACATGTAAATCCTTCGAACGGCAATGCCAAAGATATTATGGTGATGCAAAAACTGGGCCAAATTATGTTGCAGTCGAAGAAAAACTTCATCGTAGCACACTTGCAGTATTCATGCATGCACTGCCATGAAGCAATAGTATCTGGGAAGCGATGGTTTTGCACTGAATGCAAGAAATTTCAGGAGTGTGAAAGATGCCATACCGCTGATGTACACACTTCAATTAATGGCGAGGTGCATACACTTTGTCAGGTTGTTGTGGATGATATCCCCTTCAATACCGAACAAAATGATATTATCATTGAGAATGAGTTATTTGAAAGTAGAAGTAAGTTTTTGAGCTTCTGCAAGAAGAATCAGTTTCAGTTTGACACACTCCGCCGTGCCAAGTACTCCACAATGATGATCCTAGATCATCTTAAGGGTCTTACTCTGCTGACTGTTGGAACAGTCTGTAGCATTTGTTCACAAAATGTACTCCAACAGAGCTGGAAATGTGAGGTTTGTCCAAAATGTGTTGTTTGCTCTGCATGCTATAAGGATAAGGGTGCTGGCTGCCATCAACACAAGTTGACTCAAAAATATTCAACAACACCATGTCTATCCAGGAATCAGGAGTTAAATAAGATATCAGTGCCGATGCGACGGAAATTGATGGAGGTTTTGGAGCATGTATCTCAATGTTCCTCAACTATAACTGAAAGATGCTGTTATCGAAACTGTTTTCAAATGAAAAAGTTATTAGTTCATGCCAACCAGTGTACTACTCGAGTTTCGGGGGGCTGTTGTCGCTGTAAAAAGGTTTTGCAGATACTAACTTATCACTCCAAGAATTGCAAAGACTCAGAATGTCGCATACCACATTGCATGGATAAGCTAGCAGAATTGATAGCCAAACAATCTGAATCTCATGATATAGCTGCAGCTGTGGAAAGCAACAAAATTCAATGA 3981 0.3848 MNQVGFSTNWRNHPRIIYNRKWIRNEISKMIRTFPIDNKRLAPILEYFLFLSATSKEDYMNNVTLNQRVQFLLDAGIADYNGMPKEGPSTSSIVHEQLPCLRDHGSSIPTFADMNVLCDNPVSGGGSYFPQQHANNLDMDTTRYSENIGTIQNNNSINFPTTKGKSVQSENLNMKLPQIVAANISEHSNRFPQQHANNLNMDLTRYSGSMGNIQNNDSISFPTTIGKSLKSEDLNMKLPQLVSMDISEHSNLLPQQHSNNFETDLTNNRDCLEMIMQNNECMSFPNMTPSFKLNFQKNFTHDGNTEAMLRPTKIQKTTGSTFGVSLVNNASADQLSYKTVQPHSIETLVGVQQQQLEFPFSSIDGEVDKYSVEEFTNLVLGINEINSNVMVDTFGQTLKTNTFPSKGLEVAPERQDVMNSNNLNEFDIGLSSIMRTVSMDAIPTDGGDIKGRNEFDQAETNVKKKVIEPKPDQELQKLLSTIVGEIQNNVSDDTFGQTFKSEMIRSKGLDASPVFEEPDPEIHGVIDIGFNQEAANAKNKASEPKADQEKQTKSSNTTINVVSLIDLFTRDQIKEHINSLRKESVQKTTVDGTCQLCTMKAFYFEPVQIYCLHCQTRIKRNAKYFCIKGEESDAERCFCSSCYNRSKGGCIIFNGTSVCKTLFEQKKNDEVLEEPWVECNKCERWQHQICALYNSKRDLDCTAEYTCPFCHVKEIENGMHVPLPKTTIFGAKDLPRTMLSDHLEKRLFEHLMQERADWEKIEGNENLDEVVVAKSLTVREVLSADKHLIVEKQFLDIVPEEKYPAEFSYRSRVILLFQQIEGADVCIFGMYVQEYGSECANPNQRCIYISYLDSVNHFMPRRQTMSGGALRTFVYHEILIGYLDFCKKRGFTKCYIWSCPPKKEDNYILHCHPKTQKTPKDDKLVDWYHSMLKKATEENVVVGLTDVYEHFFVPTEKWNSKVTAARLPYFYGDYWCNHAMELAIDIEKECGGEYEKTLKKVVKNRSLKAMGHVNPSNGNAKDIMVMQKLGQIMLQSKKNFIVAHLQYSCMHCHEAIVSGKRWFCTECKKFQECERCHTADVHTSINGEVHTLCQVVVDDIPFNTEQNDIIIENELFESRSKFLSFCKKNQFQFDTLRRAKYSTMMILDHLKGLTLLTVGTVCSICSQNVLQQSWKCEVCPKCVVCSACYKDKGAGCHQHKLTQKYSTTPCLSRNQELNKISVPMRRKLMEVLEHVSQCSSTITERCCYRNCFQMKKLLVHANQCTTRVSGGCCRCKKVLQILTYHSKNCKDSECRIPHCMDKLAELIAKQSESHDIAAAVESNKIQ 1326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00347 1326 ProSiteProfiles Zinc finger PHD-type profile. 636 713 IPR019787 -
Car02g00347 1326 Gene3D - 1040 1091 IPR043145 -
Car02g00347 1326 SMART TAZ_2 1218 1300 IPR000197 -
Car02g00347 1326 SMART zz_5 1043 1088 IPR000433 GO:0008270
Car02g00347 1326 SMART zz_5 1156 1200 IPR000433 GO:0008270
Car02g00347 1326 SUPERFAMILY RING/U-box 1139 1201 - -
Car02g00347 1326 SMART KAT11_2 763 1056 IPR013178 GO:0004402|GO:0006355|GO:0016573
Car02g00347 1326 PANTHER CBP/P300-RELATED 451 1301 IPR013178 GO:0004402|GO:0006355|GO:0016573
Car02g00347 1326 ProSiteProfiles Zinc finger TAZ-type profile. 1215 1302 IPR000197 -
Car02g00347 1326 CDD PHD_HAC_like 638 710 - -
Car02g00347 1326 ProSiteProfiles Zinc finger ZZ-type profile. 1044 1100 IPR000433 GO:0008270
Car02g00347 1326 SUPERFAMILY TAZ domain 1225 1302 IPR035898 -
Car02g00347 1326 Pfam Histone acetylation protein 773 985 IPR013178 GO:0004402|GO:0006355|GO:0016573
Car02g00347 1326 SUPERFAMILY RING/U-box 1024 1082 - -
Car02g00347 1326 Pfam TAZ zinc finger 1227 1299 IPR000197 -
Car02g00347 1326 Gene3D TAZ domain 1221 1325 IPR035898 -
Car02g00347 1326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 662 710 IPR013083 -
Car02g00347 1326 PANTHER HISTONE ACETYLTRANSFERASE HAC2 451 1301 - -
Car02g00347 1326 Gene3D - 1157 1206 IPR043145 -
Car02g00347 1326 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 728 1155 IPR031162 GO:0004402
Car02g00347 1326 SUPERFAMILY FYVE/PHD zinc finger 672 713 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00347 Car-Chr2 3728476 3736246 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Car02g00347 HAT_KAT11 1.1e-31 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00347 K04498 - aprc:113866525 1092.8