Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00344 ATGTTCCCTTTCAATTCAAACCCTTACCcttcttttgttcctaattcatcagcttcttcttcatcacttttttcttttccttttctCAATCCTGAAAATGCTTCTTCAAGTaacaacagcaacaacaacaCTCTTTTTCTTGATCCATTTTCTATTCCATACATACCAACtcatcatcatcatcatcctcatcatcatAACATTACAAATATCCAAGAAACCCTAACCAATTTAGCTGAAaataataataatagtaataataatagtaatagtaataataataataataataataaCATTGCAATTCCAATGGCTAAACAAGATCCTTCAACAATTGGTGGTGGTTCTCACTATGGAATTTCTTGTTTCCTTGCAAAGAAACCACCAAAGAAAGATAGACATAGCAAGATTTACACTTCTCAAGGTTTGAGAGATCGAAGGGTGAGGCTTTCGATCGAGATCGCTCGAAAGTTCTTCGATCTTCAAGACATGTTAGGGTTCGACAAAGCTAGCAACACACTTGATTGGCTTTTCACAAAATCAAAAAAAGCAATTAAAGATCTAACAAAAAGCAAGCAAAAAAACAACAATGAAGATGGTGATGATGACGATGAAGATGCTAAAAGCTTCACTTCTTCTTCGGATTGTGAAGTTGTTTCGGATATCAAGCAACATTCTTCAAACCTAAAACAAAACCAAGATGGTGATGGTGATTTTTCTAAAGAGAAGAAGTTGAAAAGGGCACAAATCAAAGAATCTTCTTGTATTAGGGCAAATAAGATGAAGGAATCAAGGGAGAAagcaagagcaagagcaagagaaagaacaagtaacaagaTCTCAAACAACAATAATACATTGAAGATTCATCAATTAGAGTTGAAGAAAAAGTACCCTACAACAAATGAAAATTTTCAAGCTTTTCACCAATCTAGGTCATCTTTACAAGATCATCAACTTGTGAGTAGTAGTGAAACACCAAGAGATGATTTCAATGTTATTGAGGAATCAATTGTGATTAAGAGGAAGTTGAAGCCATCTTTGATGGTTTCtcatcatcatcatcatcaacatcaaaatcatGTGATCCCTAAGGAAGCAACAAATTTCAACAATAGTGAGTACCATTCATACCCTAATTCTTCACCAAATTGGGATGCAAGTAATAATAGTGCTTCTTCCTCTAATCGATCCACCTTTTGTGCTATTGCTAGCATGAATCTTTCTACAGGGCTCCAAATATTTGGAAAATCATGGGAGGAATGCACCAATCCACGTCTACATTAG 1287 0.2968 MFPFNSNPYPSFVPNSSASSSSLFSFPFLNPENASSSNNSNNNTLFLDPFSIPYIPTHHHHHPHHHNITNIQETLTNLAENNNNSNNNSNSNNNNNNNNIAIPMAKQDPSTIGGGSHYGISCFLAKKPPKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKDLTKSKQKNNNEDGDDDDEDAKSFTSSSDCEVVSDIKQHSSNLKQNQDGDGDFSKEKKLKRAQIKESSCIRANKMKESREKARARARERTSNKISNNNNTLKIHQLELKKKYPTTNENFQAFHQSRSSLQDHQLVSSSETPRDDFNVIEESIVIKRKLKPSLMVSHHHHHQHQNHVIPKEATNFNNSEYHSYPNSSPNWDASNNSASSSNRSTFCAIASMNLSTGLQIFGKSWEECTNPRLH 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00344 428 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 9 427 - -
Car02g00344 428 MobiDBLite consensus disorder prediction 79 98 - -
Car02g00344 428 MobiDBLite consensus disorder prediction 371 391 - -
Car02g00344 428 Coils Coil 68 88 - -
Car02g00344 428 ProSiteProfiles R domain profile. 262 279 IPR017888 -
Car02g00344 428 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 427 IPR005333 GO:0003700
Car02g00344 428 MobiDBLite consensus disorder prediction 189 213 - -
Car02g00344 428 MobiDBLite consensus disorder prediction 235 276 - -
Car02g00344 428 MobiDBLite consensus disorder prediction 225 276 - -
Car02g00344 428 Pfam TCP family transcription factor 130 281 IPR017887 -
Car02g00344 428 ProSiteProfiles TCP domain profile. 130 188 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00344 Car-Chr2 3681907 3684034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00344 126 284 TCP Transcription Factor Family AT1G67260 46.875 1.17e-30 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Car02g00344 TCP 3.7e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00344 - - cam:101499957 747.273