Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00342 ATGACGGCCAAGGATTCTCATTTAGGTAGGAATACTTGGAGGGAAATACCAAGCTATAATCCACCACAAGTCTCAAGCATTCGGCGAAAGAGAGGCTTCAATGAATTGAGCAATCAGTATGTAACAAATCATGCAGGGCTCTCTGCAAACTGGCGTTCTCATCTTGACATGACAAACTGCCGTAAATTGATCCAAAAAAAAATTTATGAGTTCATCAATCCTGTAACTCAGAATGAGCAACTTACACCTATTCTGGAATTATTGCTACTTTCTAAGGCTGCTTCAAAGGAGGAATATATGAACCTGGCGACACTGAATCAACGTGTGCTAGATCAAGTGGAGTCTGCACTCTCTTACTCCACTGATAGCGTACCAGAAGGGAGACTATCTTACCCTTCTTCTGTTCAGCAGCTGCCTTGTTTGCCTGATCATGGTTCATCAATCCACACACTTGCTGATATGGATGTGCTTCGTAACAACCCTGTTTCGGGTGGTAGAAGCAATCTTGAGGCTAACTCCCAATCAATTAACAAATATTTTCCTCAGCAATGTGCAAATAATTTGGAGATGAATCTGGCAAATACTAGAGATTGGTCGGGGACTATCCAGAATAACGAGACCATGAATTTTCCTACTACAATGGGAAAATCCCTTGAAACTGAAGATTCAAATTTAATATTCCCTCCTCAACCTGCCTCAGTGAATATTTCGGAATTTTCCTATCATTTAACTGACTTGAGACCTTGCATAGACCAGGAAGAGACATGGCAGCATCAACCACAGATGGTAGATTTTCAGAATAATTCCATTGTAAAACATGATGTTATTAACGTCCCTTTTGGTTATACCAAATCTATACTACAACCTACCAAAAGAAAGAAAGTGATAGATTCAGATTTTAATTTATCTTTGATTGACAAATCAAGTTTTGATCAATGGAATTGGGAGACGGTTCAATATTATTCTTCTCAAACAATTTCGGAATTGCAGAAACAGTCAGAAAAAGGCTTAGAAGCTCGTCAAATATCAGATGATGAGCCAGACTCCATAAGCTATGGTGTGATAGAGAGGAGAAACTCAATGCAAATTGACATTAGATCGATCTCCACTATTGATAGACAGGACATACAAGGAAGAACTGGATCCAACCAGGAGGGGATAAATACTGAAAAGGAACTCGGTGAGCCAAAAGCTGATCAAGGGAAGCAAACCAAGTCCTCAAATACAACTGTTAATGAGATAAATAACGAGGACATTCAAGACAGAGCTGAATTCAACCAGGTGGCGGCAAACGCTAAAAACGAAGTCAGTGTGCCAAAAGCTGATCAAGAGAAGCCAACAAAGTCATCAAACACAATTGTTAATGCTGTTTCCTTGACTGACTTTTTCACAAGTGATCAAATAGCAGAACATATTAGTAGCCTAAGAAAGAAATTTGTTCGGGTTGCAAATGAGGAGGAAACAGGAATTGATGCTAACACATGTCAGTTGTGTTTAATGCAAAAGCTTTACTTTACACCAGTACCAATTTTTTGTTTAAGTTGTGGCATCCGCATCAAGAGAAGTACACCATATTTCTGTAGCAAAGAAGAAGAATTTGATGCACAGCGTTGCTTTTGCTCAGTATGCTATAAGGCTTCTAAAGATGGTTACATCAAATTTAATGGGGCATCTGTTTCTAAGGCAAATCTAGAAAAAAGGAATAATGGTGACGTACTTGAAGAACCGTGGGTTGAATGCAATAAATGCAAAAGATGGCAGCATCAAATATGTGCACTATATAACAACAAAAAAGATTTGGACTGCACTGCTGAGTATACATGTCCTTTTTGCCACGTAAAAGAAATTGAAAATGGAATGCATGTTCCCTTACCAAAGACTGCTATTTTTGGTGCTAAGGAATTGCCGAGAACCATGCTTAGTGACCACTTAGAGAAAAGACTTATTGAGCGCCTCATGCAAGAGAGAGCAGACTGGGAAAAAGTTCAAGGGAATAAGAATCTTGATGAGGTTATAGCAGCAAAAAGTCTTTATGTTAGAGAAGTGTTTTCTGTTGACAAACAATTGAAAGTCAATAAGGAGTTTCTGGACATCATTCCCGAGGAGAATTACCCTGCGGAGTTCTCTTACAGATCAAGAGTTATTCTTCTGTTTCAGAAGATTGAAGGAGCAGATGTATGCATTTTTGGAATGTACACCAAGGAGTTTGGCTCCCAATGCGGCGGTCCAAATCAGCGTTGCATTTATATTACATATCTTGATTCTGTCAAATATTTTAGGCCTGAAAGAGCGACTATGAGTGGAGAAGCACTTCGTACCTTCGTTTACCATGAGATATTGATTGGATACCTTGATTTTTGTAAGAAACGGGGTTTCTTAAATTGCTACATATGGGCCTGTCCTCCTTCAAAAGGGGATGATTATATACTAAATTGCAAACCTGGAGACCAAAAAACTCCGAAGAATGATAAGCTACGCCGCTGGTATTATTCATTGCTTAAAAAGGCTACTGAAGAAAATATTGTTGTTGGTTTAACCAACATATATGATCATTTCTTTGATGCTACTGAAAAATGGGACTTCAAGTTGACAGCTTCTCGTTTGCCATACTTTGATGGAGACTACTGGTGTTATCATGCTATGGAGATAGCCAAGAAAATTGAAAAAGAGTGTGGAGGAGAGTATGAAACGATGTTGAAGAAGATAGTGCCAAATAGATCTTTAAAGGCCTTGGGACGTGATGTCAATCCTTCCAAAGACGCTGCCAAAGACATTCTGGTGATGCAAAAACTGGGCCAAAAGATAATGCTTGCCAGGGACGATTTCATGATAGTTCACTTGCAACATTCATGCATCCACTGCCATGAAGTGATAGTGTCTGGGAAGCGATGGTTTTGCACTGAATGCAAGAAATTTCAGGAGTGTGAAAGATGCCATAGTTCTGATGTACACACTTCAAAAAATGGCAAGGTGCATACACTTTGTCAGGTCGTGGAAGATTTCCCCTTCAACAATAATCAGAATGATACCATCATTGAGAATGGATTATTTGAGAATAGAAACAACTTTTTGAGCTTCTGCCAGAAGAATCAGTTTCAGTTTGACACACTCCGCCGTGCCAAGTATTCCTCGATGATGATCATCTACTATCTAAACAATCCTCCTACTTTGCTGAGTTCTGGAACATGTAGCATTTGTTATGCATACAATGTATTCCAAAAGTGCTGGAAATGTGAGATTTGTCCAGAATGTACTGTTTGCTCTGCATGCTATAAGGATAGAGGTGCTAACAGCCATGAACACAAGTTGATTCAAAAAGTTTCAACAGAACTAAGTCATTCTGAGAATCAGGAGTCAAAGCAGGAAACGATGCCGAAACTTATGGAGGTTTTGCAGCATGCTTCTCAATGTAGCGCAATAAATGCTAAACTGTGCTCTTATTCACACTGTTTTCAAATCAAGAAGCTGTTCTCTCATGGCAGTAGGTGTACTATTCGCGCTAATGGCGGCTGCCACCAATGTAAAAGGATATGGTCTATACTAATTGCTCACTCCAAAAATTGCAAAGACTCAAAATGTAACATACCACGTTGCAGAGATCTGAAGAAGAATGTTAAACTGAAAGCGATGCAATCCAAATCTCGGCATGGAGCTGCAGTTTGTGGGAAGTGA 3672 0.3938 MTAKDSHLGRNTWREIPSYNPPQVSSIRRKRGFNELSNQYVTNHAGLSANWRSHLDMTNCRKLIQKKIYEFINPVTQNEQLTPILELLLLSKAASKEEYMNLATLNQRVLDQVESALSYSTDSVPEGRLSYPSSVQQLPCLPDHGSSIHTLADMDVLRNNPVSGGRSNLEANSQSINKYFPQQCANNLEMNLANTRDWSGTIQNNETMNFPTTMGKSLETEDSNLIFPPQPASVNISEFSYHLTDLRPCIDQEETWQHQPQMVDFQNNSIVKHDVINVPFGYTKSILQPTKRKKVIDSDFNLSLIDKSSFDQWNWETVQYYSSQTISELQKQSEKGLEARQISDDEPDSISYGVIERRNSMQIDIRSISTIDRQDIQGRTGSNQEGINTEKELGEPKADQGKQTKSSNTTVNEINNEDIQDRAEFNQVAANAKNEVSVPKADQEKPTKSSNTIVNAVSLTDFFTSDQIAEHISSLRKKFVRVANEEETGIDANTCQLCLMQKLYFTPVPIFCLSCGIRIKRSTPYFCSKEEEFDAQRCFCSVCYKASKDGYIKFNGASVSKANLEKRNNGDVLEEPWVECNKCKRWQHQICALYNNKKDLDCTAEYTCPFCHVKEIENGMHVPLPKTAIFGAKELPRTMLSDHLEKRLIERLMQERADWEKVQGNKNLDEVIAAKSLYVREVFSVDKQLKVNKEFLDIIPEENYPAEFSYRSRVILLFQKIEGADVCIFGMYTKEFGSQCGGPNQRCIYITYLDSVKYFRPERATMSGEALRTFVYHEILIGYLDFCKKRGFLNCYIWACPPSKGDDYILNCKPGDQKTPKNDKLRRWYYSLLKKATEENIVVGLTNIYDHFFDATEKWDFKLTASRLPYFDGDYWCYHAMEIAKKIEKECGGEYETMLKKIVPNRSLKALGRDVNPSKDAAKDILVMQKLGQKIMLARDDFMIVHLQHSCIHCHEVIVSGKRWFCTECKKFQECERCHSSDVHTSKNGKVHTLCQVVEDFPFNNNQNDTIIENGLFENRNNFLSFCQKNQFQFDTLRRAKYSSMMIIYYLNNPPTLLSSGTCSICYAYNVFQKCWKCEICPECTVCSACYKDRGANSHEHKLIQKVSTELSHSENQESKQETMPKLMEVLQHASQCSAINAKLCSYSHCFQIKKLFSHGSRCTIRANGGCHQCKRIWSILIAHSKNCKDSKCNIPRCRDLKKNVKLKAMQSKSRHGAAVCGK 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00342 1223 SUPERFAMILY FYVE/PHD zinc finger 574 614 IPR011011 -
Car02g00342 1223 MobiDBLite consensus disorder prediction 1 25 - -
Car02g00342 1223 Pfam TAZ zinc finger 1126 1198 IPR000197 -
Car02g00342 1223 PANTHER CBP/P300-RELATED 376 1203 IPR013178 GO:0004402|GO:0006355|GO:0016573
Car02g00342 1223 MobiDBLite consensus disorder prediction 431 450 - -
Car02g00342 1223 MobiDBLite consensus disorder prediction 372 389 - -
Car02g00342 1223 Gene3D TAZ domain 1113 1220 IPR035898 -
Car02g00342 1223 PANTHER HISTONE ACETYLTRANSFERASE HAC2 376 1203 - -
Car02g00342 1223 SMART TAZ_2 1118 1199 IPR000197 -
Car02g00342 1223 SUPERFAMILY RING/U-box 1040 1105 - -
Car02g00342 1223 CDD PHD_HAC_like 539 611 - -
Car02g00342 1223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 571 615 IPR013083 -
Car02g00342 1223 Gene3D - 944 993 IPR043145 -
Car02g00342 1223 ProSiteProfiles Zinc finger PHD-type profile. 537 614 IPR019787 -
Car02g00342 1223 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 629 1056 IPR031162 GO:0004402
Car02g00342 1223 SMART PHD_3 539 612 IPR001965 -
Car02g00342 1223 MobiDBLite consensus disorder prediction 400 416 - -
Car02g00342 1223 SUPERFAMILY RING/U-box 926 986 - -
Car02g00342 1223 SMART KAT11_2 664 958 IPR013178 GO:0004402|GO:0006355|GO:0016573
Car02g00342 1223 Pfam Histone acetylation protein 675 884 IPR013178 GO:0004402|GO:0006355|GO:0016573
Car02g00342 1223 ProSiteProfiles Zinc finger ZZ-type profile. 946 1002 IPR000433 GO:0008270
Car02g00342 1223 SUPERFAMILY TAZ domain 1116 1203 IPR035898 -
Car02g00342 1223 ProSiteProfiles Zinc finger TAZ-type profile. 1117 1201 IPR000197 -
Car02g00342 1223 MobiDBLite consensus disorder prediction 372 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00342 Car-Chr2 3644011 3651686 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Car02g00342 HAT_KAT11 6.8e-26 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00342 K04498 - aprc:113866525 1080.09