Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00339 ATGTATAAACGTGAAGGAGAGCAACATACATATTTCTTCACTAAAAGAAATAGGAAATATCCAAAAGGAGAACGTCCAGATCGTGGTGTTAGAGGTTTTGGTTTCTGGAAAGCTACTGGAATTGATCATCCAATAAATGACAATGGCACTATAATTGGATTTAAAAAGACTTTGGTATTTTATAGAGGAAATCCTAAAGGTGGTGACAAAACTAATTGGATTATGCAAGAGTACACCATAAATATTGAGAATATTGAGAGCACAAGTACAACTCCTACTTCTAAGGTAAAATAA 294 0.3333 MYKREGEQHTYFFTKRNRKYPKGERPDRGVRGFGFWKATGIDHPINDNGTIIGFKKTLVFYRGNPKGGDKTNWIMQEYTINIENIESTSTTPTSKVK 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00339 97 ProSiteProfiles NAC domain profile. 1 97 IPR003441 GO:0003677|GO:0006355
Car02g00339 97 Pfam No apical meristem (NAM) protein 4 79 IPR003441 GO:0003677|GO:0006355
Car02g00339 97 SUPERFAMILY NAC domain 4 85 IPR036093 GO:0003677|GO:0006355
Car02g00339 97 PANTHER NAC TRANSCRIPTION FACTOR 56 5 90 - -
Car02g00339 97 Gene3D NAC domain 1 97 IPR036093 GO:0003677|GO:0006355
Car02g00339 97 PANTHER NAC DOMAIN-CONTAINING PROTEIN 102-LIKE 5 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00339 Car-Chr2 3581551 3581844 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00339 6 80 NAC Transcription Factor Family AT1G77450 56.000 9.01e-23 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car02g00339 NAM 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00339 - - cam:101503045 210.69