Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00317 ATGTCGAAATCAATAACGCATTTGGTGTGTTGGAAGTTTGAAGGAAAGAAATATGATATTGCCCGAAAGCTTAGAATACATATAGTCAACCACCGTTGGATTGAAGACTGTATAAAGGAAGGAAGGCGTGTCCCAGAAGATTCTTATATCTTGCAAAGTGGATATGAAGTAGGGCCATTGTTAATAGAAGTTCCATTCACTGTCCAAGCAAGTAGCTTGTCCAAGAATAAAGTGGTCAGTGGCAGGTTCTGTGATATTGGGCCTGAAAGGCAAAATACTGACTTCAGTGCTGGGGTTTGTGAAATTTCTGTTTTGGAAGATTCTTGTTTATTGAAAAAGCATGAGGAGTCAAGTTCATATTCATCTAGACTGTCAAGGAAAGGTAAACGAAATAGTGGCAATGAAGTTAAAGAGGAGTCAAGTTCATATTCACCTAGACTGTCAAGGAAAGGTAAAAGAAATACTGGCAATGAAGTTAATGAGGAGTCAAGTTCATATTCATCTAGACTGTCAAGGAAAGGTAAAAGAAATAGTGGCAATGAAATTAGTACTGCGGCTAGACGTTCCCGTAAAGAAAGAAGGGTTGTGAAATATGATGATGAAGGGGTTTTGGACCCTATAATTTTGGATTTAAGCACAGATGATGAGCTCTCCAGAATGGATAGGCTACATACTGAAGCTGCAGCTACCTCTACCCTTCCTGGCCGGGTCAATGTTGACAACATTCAAGAAAACAGTGAAGGACTTGATGCTGGATTATGCCGTCAAAGTAGAACTATCGATAGAAGTTCAGATGGCATTGAGCAGACCAGAAGTTCAACTTTGTCTATAGAAGATCCCTTTCCTGTGACACAAACATCAGTAGATTTATGTTCCAGTGCTGCTGAAAAGTTCAACGATGGTGATCCAGTAGATAACTCTGATGACTTACCTACTTCAAATGAGTTGTCATGTGTTATATGTTTCACAGATTTCAGCTCAACAAGGGGGATTTTAGCGTGTGGACATCGATTTTGTTTTAAGTGCATCCAGGATTGGGTCGATCGCAGAATTGCAATGGGGAAAATTTCAAACTGTCCTTTGTGCAAGGCAAGTATTACAATGATCAAGAAAGTTGAGCATGCAGCCACCACTGATCAAAAAGTATACTCCCAGTCAATTCCATGTGACTACACAAGCTCAGATATTTTTATCCCCATGGAACAAGAATTTCCACACAATAACTTAGAGGCAGGTGCTTGTGTAATTTGCCGTGGGCGAGAACCTGAGGATCTACTTGAGAATTGTGATGTTTGTCGAACTCGAAGAATTCATTCCTATTGCATGGACCCTCCTTTACGTCCTTGGACATGCAGTTCCTGCAAGGAACTTCGAATGCTTTATCGTAACCACTCATATTAG 1401 0.4033 MSKSITHLVCWKFEGKKYDIARKLRIHIVNHRWIEDCIKEGRRVPEDSYILQSGYEVGPLLIEVPFTVQASSLSKNKVVSGRFCDIGPERQNTDFSAGVCEISVLEDSCLLKKHEESSSYSSRLSRKGKRNSGNEVKEESSSYSPRLSRKGKRNTGNEVNEESSSYSSRLSRKGKRNSGNEISTAARRSRKERRVVKYDDEGVLDPIILDLSTDDELSRMDRLHTEAAATSTLPGRVNVDNIQENSEGLDAGLCRQSRTIDRSSDGIEQTRSSTLSIEDPFPVTQTSVDLCSSAAEKFNDGDPVDNSDDLPTSNELSCVICFTDFSSTRGILACGHRFCFKCIQDWVDRRIAMGKISNCPLCKASITMIKKVEHAATTDQKVYSQSIPCDYTSSDIFIPMEQEFPHNNLEAGACVICRGREPEDLLENCDVCRTRRIHSYCMDPPLRPWTCSSCKELRMLYRNHSY 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00317 466 PANTHER F5A8.9 PROTEIN 1 463 - -
Car02g00317 466 ProSiteProfiles Zinc finger RING-type profile. 318 363 IPR001841 -
Car02g00317 466 SUPERFAMILY BRCT domain 1 52 IPR036420 -
Car02g00317 466 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Car02g00317 466 MobiDBLite consensus disorder prediction 120 193 - -
Car02g00317 466 Pfam twin BRCT domain 1 33 IPR001357 -
Car02g00317 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 465 IPR013083 -
Car02g00317 466 SMART ring_2 318 362 IPR001841 -
Car02g00317 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 387 IPR013083 -
Car02g00317 466 MobiDBLite consensus disorder prediction 158 184 - -
Car02g00317 466 ProSiteProfiles BRCT domain profile. 1 51 IPR001357 -
Car02g00317 466 SUPERFAMILY RING/U-box 309 371 - -
Car02g00317 466 MobiDBLite consensus disorder prediction 120 157 - -
Car02g00317 466 Pfam Ring finger domain 317 363 IPR001841 -
Car02g00317 466 SUPERFAMILY FYVE/PHD zinc finger 409 457 IPR011011 -
Car02g00317 466 Gene3D BRCT domain 1 55 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00317 Car-Chr2 3341956 3347627 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00317 5 57 Core DNA Replication Machinery Family AT4G02110 53.704 6.03e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00317 - - cam:101495587 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00317 02 3341956 3347627 Car02g00317 02 3341956 3347627 ECH