Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00298 ATGGAGATGCTAAGAGGAGAAACATTTCTATGTTTTGTTGCATTTTTCTTGTTTTGGAGTTCTTCAAATGCTTTGCTTTCATCGAAGGGAATAAACTTTGAAGTTCAAGCTTTAATGGGAATAAAAACTTGTTTAGTTGATCCTCATGGTATTTTAGAAAATTGGGATGGTGATGCTGTTGATCCATGTAGTTGGAATATGGTTACTTGTTCATCTGAGAATCTTGTTATTAGCTTGGGAATTCCTAGTCAAAATTTATCTGGTACATTATCTCCAAGCATTGGAAACTTAACCAATCTTCAGACAATAGTGTTACAGAATAACAACATAACAGGACCAATACCTTCAGAGCTAGGAAAACTTTTCAAGCTTCAAACACTTGATCTCTCTGATAACTTCTTCAATGGAGAAATTCCTCATTCTCTTGGTCATCTGAGGAACCTCCAGTACCTGAGGCTTAATAATAACAGTTTTTCTGGAGAATGTCCAAATTCACTGGCTAACATGGCACAGCTAGCTTTTCTTGACTTGTCATTCAACAATCTTAGTGGTAATGTGCCTAGAATTTTGGCCAAATCATTCAGTATTGTTGGAAACCCTCTGGTGTGTGCTACAGGAAAAGAAACAAACTGTCATGGGATGAAACTCATGCCTATGTCCATGAACTTAAACAATACTGACTATGCATTACCATCAGGCAGAACAAAAGCTCAAAAAATGGCTATGGCCTTTGGTTTGAGTCTTGGATGCCTTTGTTTGTTAGTCCTTGGATTTGGACTTGTACTATGGAGGAGGCATAAGCATAATCAACAAACATTCTTTGATGTTAAAGACCGACATCACGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTTCAATTAAGAGAACTTCAGATTGCTACTCACAATTTCAGCAACAAAAACATCTTAGGAAAAGGTGGTTTTGGAATTGTATACAAAGGAATTCTTTCAGATGGAACACTTGTGGCTGTAAAGAGACTTAAAGATGGCAATGCAATTGGAGGAGAGATACAATTTCAGACTGAAGTTGAAATGATCAGCTTGGCAGTTCATAGAAACCTTCTCAAACTGTATGGATTTTGTATGACAACAACAGAAAGACTTTTAGTTTATCCCTACATGTCGAATGGCAGCGTCGCTTCTCGTCTCAAGGCTAAGCCAGTGTTGGATTGGTGCACAAGAAAACAAATAGCCTTAGGAGCAGCAAGAGGACTACTATACCTTCATGAGCAATGTGATCCAAAGATAATCCATAGAGATGTGAAAGCTGCAAACATATTACTTGATGACTATTGTGAAGCAGTAGTTGGAGATTTTGGTTTGGCAAAACTTTTAGACCACAAAGATTCACATGTAACAACTGCAGTGAGAGGAACAGTAGGGCATATAGCACCTGAGTATCTTTCCACAGGACAATCTTCTGAGAAAACTGATGTATTTGGATTTGGCATTTTGCTTCTTGAATTGATCACTGGTCTTAGGGCTCTTGAGTTTGGAAAAGCAGCCAACCAGAAAGGAGCTATGCTTGATTGGGTAAGTTCTAGTCTCTCTGTATAA 1578 0.3809 MEMLRGETFLCFVAFFLFWSSSNALLSSKGINFEVQALMGIKTCLVDPHGILENWDGDAVDPCSWNMVTCSSENLVISLGIPSQNLSGTLSPSIGNLTNLQTIVLQNNNITGPIPSELGKLFKLQTLDLSDNFFNGEIPHSLGHLRNLQYLRLNNNSFSGECPNSLANMAQLAFLDLSFNNLSGNVPRILAKSFSIVGNPLVCATGKETNCHGMKLMPMSMNLNNTDYALPSGRTKAQKMAMAFGLSLGCLCLLVLGFGLVLWRRHKHNQQTFFDVKDRHHEEVYLGNLKRFQLRELQIATHNFSNKNILGKGGFGIVYKGILSDGTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLKLYGFCMTTTERLLVYPYMSNGSVASRLKAKPVLDWCTRKQIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHKDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQKGAMLDWVSSSLSV 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00298 525 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Car02g00298 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Car02g00298 525 SUPERFAMILY L domain-like 34 196 - -
Car02g00298 525 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Car02g00298 525 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 4 520 - -
Car02g00298 525 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Car02g00298 525 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 4 520 - -
Car02g00298 525 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Car02g00298 525 SMART serkin_6 304 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g00298 525 Pfam Protein kinase domain 305 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g00298 525 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Car02g00298 525 Gene3D Transferase(Phosphotransferase) domain 1 381 524 - -
Car02g00298 525 SUPERFAMILY Protein kinase-like (PK-like) 281 504 IPR011009 -
Car02g00298 525 ProSiteProfiles Protein kinase domain profile. 304 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00298 Car-Chr2 3142930 3147319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00298 1 519 Receptor kinase-like Gene Family AT5G16000 75.624 0.0 814
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Car02g00298 Pkinase 3.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00298 - - gmx:100806650 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00298 02 3142930 3147319 Car02g00298 02 3142930 3147319 ECH
Car02g00298 02 3142930 3147319 Car03g00315 03 7468854 7474874 PCT