Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00247 ATGTGGTACTGCAGTTTCTCAGGTCCTGTCCAGGAGAAGATCTCCAGTAGTGCATTACCTGAAAAGAAGCTTTCTGAATCAAGTTTTTCTATCCCAAGCCAGACTAAAAAAGACTATCACGCAACCCATAGCCGTCAGCTTGATGATTTTTCTTCAAATGACATTTCTATATTGTCTTCTAAGAAATCAAAAGTAAAGAAGAAAGGTGGTGATGTAATATCTATTGCACCTGACCCTGCTGAGCTTCAAGATGCCATCATTGGAAAGTTTCTTGAGTTTTTGGAGGACTTATGTAGCAAGGCTGAATGGAATGGTGACGATAGAGATGAAGCAGAATGGTTGCCACTGCCCCTTTCAGATCTTAGATTGCTTGTTAATGAAATAATGACTATACGTGAGAAGAAACTTCTGCATTTGGTTCCTGTAGAATTTCTTGTTAGACTGCTAAAGGTTTTAGATCATCAGATACATAGAGCAGAAGGCCTGTCGATTGAGGATTGCGATAATTCCAATTCAGAACTAGTTTCGGCTCTTTTAGTTGCGTTGGAGTCCATTCATGCTGCTCTGGCGGTGATGACTCATACTGACATGCCAAAGCAACTTTATAAAGAAGAGGTCATTGAGAGAATTCTGGAGTTTTCCAGGCATCAGATAATGGATGTGATGTGTGCATGTGATCCATCATATCGTGCATTATACAGACCTAGTGAAAACACTACACTTGAAGTCGATGAAGAAGAAAGTGATGCTGAGTTTGGTTCAGCAAGTAAAAAACGGCGTACCAGCAGCAAGACAGTAAAGTTGAAGAAATCAGCATCAAACAGGTTCTCCAGTGCTGTGAATGTTATTCTTCAGAAGTTGTGTACTGTTGTTGGTCTACTCAAGGATTTGTTGTTAATAGAGAGGTTGTCAGATAGTTGCATTTTACAACTTATAAAAACAAGCATTACAACATTCTTGGTTGATAACATCCAGCTCTTGCAATTGAAGGCAATTGGTTTAGTTAGTGCGATATTCTATTTATACACACAACATCGCACTTATGTGATAGATGAAATGCTTCAACTTCTTTGGAAATTACCTCATTCAAAGCGAGCTTTAAGGAGTTATCACATACGCGAGGAAGAGCAAAGACAGATCCAGATGATTACTGCTTTGCTGATTCAGTTAATTCACTGTAGTGCTAACCTTCCTGATACTTTAAGAGAAGCATCAAGTGGTAACTCTGTATTGGAAGTCTTGGTTGATGCTAGTTATCCTACTAAATGCCGTGAGGCAGTAACAGAAGCCTGCTGTCTATTCTGGGGCCGTGTACTTCAGCGGCTTACAAGTGCAAAGACTCAGGATACTTCTGAATTGAAATCCATAATGGAGAATCTTGTTACTGATTTACTGACGACTCTAAATTTACCTGAATATCCTGCTTCAGCTTCTATTTTAGAGGTTCTATGTGTCCTACTAATTCAGAATGCTGGAACAAACTCCAAGGATATCACTGCACGCTCCATGGCTATTGATATTCTTGGCACTATTGCTGCAAGGTTGAAGCGTGATGCTATGATTTGTAGCCGGGAGAAGTTCTGGATACTTCGGGATCTACTTAGTCAGGACGCTGCTACTCGGCATTATCCAAAAGATACATGTTGTGTCTGTTCGGGTGGAAGGGTAGAAAATTTGGTCATATGTCCAGGCTGCAATAGGCCTTTTCATGCTGATTGTCTGGACATCAAAGAAGATGAAGTTCCTAACCGGAACTGGTACTGTCATATGTGCATCTGCTCAAAGCAACTGCTTGTATTACAGTCATATTGCAATTCCCAGCGCAAGGGTAATGTAAAAAAGAACCATGAAGTTTCAAAGGATGATTCTGCAGTTTCTGACCATGAAATTGTTCAACAATTGCTTTTGAATTACCTTCAAGATGTCACCTCTGCTGATGACCTGCATCTTTTCATTTGCTGGTTTTATCTCTGCTCGTGGTATAAAAATGATCCAAATTGCCAGCAGAAGCTCATTTACTACATTGCTAGGATGAAATCAAGAATCATAATACGGGATTCTGGTACTGTTTCATCCATGCTGACGAGAGATTCAATCAAGAAGATTACTCTAGCTTTAGGCCAAAAAAGTTCATTTTGTCGAGGGTTTGATAAGATTTTTCACACGCTTTTGGGAAGCTTGAGGGAGAACTCTCCAGTTATTAGGGCTAAAGCTTTACGAGCAGTTAGTATCATTGTAGAGGCCGACCCAGAGGTATTGGGTTATAAACAAGTACAATCAGCTGTTGAAGGTAGGTTCTGTGACTCGGCGATATCTGTCAGAGAAGCCGCATTGGAACTTGTTGGTAGGCATATTGCTTCACATCCCGATGTGGGTTTTAAGTATTTTGAGAAGATTACAGAGAGAATTAAAGACACTGGAGTAAGTGTTCGGAAACGAGCTATAAAAATTATTCGAGATATGTGCAGTTCAAATGCCAACTTCTCGGGATTTACAAGAGCCTGCACAGAGATAATTTCACGTGTTACTGATGATGAATCGAGTATACAGGATCTTGTTTGCAAAACATTTTATGAGTTCTGGTTTGAGGAGCCTTCTGCTTCCCAAACTCAGGTTTTTGGAGATGGTAGTACAGTTCCACTTGAGGTAGCTAAGAAAACAGAACAAATTGTTGAAATGTTGAAGAGAATGCCCAATAATCAACTTCTTGTAACCGTAATAAAGCGCAACTTGACACTTGATTTTTTACCGCAATCAACAAAAGCAATCGGGGTCAACCCAGTGTCCCTTGTAACAGTGCGTAAACGTTGTGAATTGATGTGCAAATGCTTGCTGGAGAAGATATTGCTGGTTGACGAAATGAACAGTGATGAAGTGGAAAAGCATGCACTTCCATATGTGCAAGTCTTGCATGCATTTTGTCTTGTGGACCCGACTCTCTGTGCACCAGCTTCTAACCCTTCCCAGTTTGTTGTTACGTTGCAGTCATATCTGAAGACTCAGGTTGACAATAGCATGGTTGCACAGCTACTTGAGAGTATAATATTTATAATTGATGCTGTGTTGCCATTGCTGCGGAAGTTACCTCTGAGTATTGTGGATGAACTTGAGCAAGATTTGAAGCAGTTGATTGTCCGGCATTCTTTCTTGACAGTTGTCCATGCTTGTATCAAATGTCTCTGCTGTATGAGTAAGATGGCAGGAAAGGGGGATGCTGTAGTTGAGCAACTTATTCAGGTCTTCTTGAAATGTTTGGATACCCAGGCAGTTGTAAACAAGCAGCAAGTGGGGCGATCTCTCTTCTGTCTCGGTTTGCTTATTCGTTATGGCAACATATTGTTAGCAAGCTCTGGTAATAAACTTGTTGATGTTAGGAGGAGTCTCAGCTTGTTTATGAAGTATCTTGACGTGGATGATTATTCTCTTAAGGTTAGATCATTGCAGGCATTAGGATATGTTCTAATTGCAAGGCCTGAATATATGTTAGAAAATAACATTGGAAAGATACTGGAGGGTACACTGTCGAATACTGCTGATGTTCGAATTAAGATTCAAGCATTGCAAAACATGTTTGAGTATCTTCTTGATGCTGAAAGCCAAATGGAAACAGACAAAGTTGAAGATAACGCATCTGGTCACTCGGTCAGAGCTGGGCATAGTGTACCTGTTGCGGCTGGTGCTGGTGATACAAACATATGCGGTGGTATTATTCAGTTATACTGGGATAATATTTTGGGCAGATGTTTAGATTCCAGTGAACAAGTTCGCCAAACAGCCTTGAAGATTGTTGAAGTTGTGCTGCGCCAAGGTCTTGTTCATCCCATCACCTGTGTTCCATATCTTATAGCACTTGAAACGGATCCTTTGGAGTCAAATGCAAAGTTGGCTCATCATCTCCTAATGAATATGAATGAGAAGTATCCTGCATTTTTTGAAAGCCGCTTGGGCGATGGACTTCAAATGTCATTTATGTTCATGCAATCTGTTTGTGGTAGTCCTGAAAATGTTAATCATAAGACACCATCCAAGATCCCTGTTTCTGGAAAAGGGAAACCTGAGTCTGACTCGCTCACTCAAGCACGACTTGGTGTTTCTCGAATATACAAGCTCATTAGAGGGAACCGGATATCAAGGAACAAATTTATGTCCTCAATTGTGCGGAAGTTTGATAATCCAAGATGGAACAAATTAGTAATACCTTTCTTAATGTACTGCACAGAGGTCCTTGCCTTGCTTCCATTCACTGCACCTGATGAGCCGCTTTATTTAATTTATGCCATCAATCGAGTAGTTCAGTTGAGGGCTGGTCCACTGGAGGCAAATTTCAAAGCCTGGAGTTCAAGCTTGTTACAAAGAGAGGGCGACGGTACACCTCATGGGAATGGAATGTATCAACGGGTGCCACATGAACCTATTCTTACAACCCAAGTTCAGTCAATGGACTTGAATGGCACATTTCAGCAAAATCTAGATGTTCAGCCTTACTTAGTTGATATGACATCAGTGGATTTAAACGGAACAAATCACCAACTGCCAGATTATCCTTTATCACATAATGGTGGGTCAAAAGTAAAGCCACACACTGCTGGTTTTGCAGATTCCCTTACCTTCTCAGAAGATGATACAGAGAAATTTCAGGCTGACTGTTTATCTGCGATTGCATTGCAACTTCTTTTAAAGCTAAAGAGACACCTAAAAATCACGTATAGTCTCGATGATGCCAAATGTCAGGCTTATTCTCCAAGTGAACCGCCAAAACCTGGAGATGTAATCTCAAAACAGAGTATTCCATTTAATATTGGTGAATCTCAGTTCAGTTTGCCTACAAGTCCGCAAGAATTAATACAAAGATATCAGGAGTTTAAAAACGCATTGAAGGAAGATACAGTGGATTATTCACTCTACACTGCAAATATAAAACGGAAGCGACCAACACCCAGAAAAGGTCGAAAAACTGGACCTATACCGATGGTAGGTGGGGATTTTGGGGATGATGATGATGAAGATTGGGCTGGTGGAGCGCGCAACATAAATTTTAGTGGTGGACGCAGGGCTAACCTTAGAAGCTCCAGACAATACTGA 5082 0.4073 MWYCSFSGPVQEKISSSALPEKKLSESSFSIPSQTKKDYHATHSRQLDDFSSNDISILSSKKSKVKKKGGDVISIAPDPAELQDAIIGKFLEFLEDLCSKAEWNGDDRDEAEWLPLPLSDLRLLVNEIMTIREKKLLHLVPVEFLVRLLKVLDHQIHRAEGLSIEDCDNSNSELVSALLVALESIHAALAVMTHTDMPKQLYKEEVIERILEFSRHQIMDVMCACDPSYRALYRPSENTTLEVDEEESDAEFGSASKKRRTSSKTVKLKKSASNRFSSAVNVILQKLCTVVGLLKDLLLIERLSDSCILQLIKTSITTFLVDNIQLLQLKAIGLVSAIFYLYTQHRTYVIDEMLQLLWKLPHSKRALRSYHIREEEQRQIQMITALLIQLIHCSANLPDTLREASSGNSVLEVLVDASYPTKCREAVTEACCLFWGRVLQRLTSAKTQDTSELKSIMENLVTDLLTTLNLPEYPASASILEVLCVLLIQNAGTNSKDITARSMAIDILGTIAARLKRDAMICSREKFWILRDLLSQDAATRHYPKDTCCVCSGGRVENLVICPGCNRPFHADCLDIKEDEVPNRNWYCHMCICSKQLLVLQSYCNSQRKGNVKKNHEVSKDDSAVSDHEIVQQLLLNYLQDVTSADDLHLFICWFYLCSWYKNDPNCQQKLIYYIARMKSRIIIRDSGTVSSMLTRDSIKKITLALGQKSSFCRGFDKIFHTLLGSLRENSPVIRAKALRAVSIIVEADPEVLGYKQVQSAVEGRFCDSAISVREAALELVGRHIASHPDVGFKYFEKITERIKDTGVSVRKRAIKIIRDMCSSNANFSGFTRACTEIISRVTDDESSIQDLVCKTFYEFWFEEPSASQTQVFGDGSTVPLEVAKKTEQIVEMLKRMPNNQLLVTVIKRNLTLDFLPQSTKAIGVNPVSLVTVRKRCELMCKCLLEKILLVDEMNSDEVEKHALPYVQVLHAFCLVDPTLCAPASNPSQFVVTLQSYLKTQVDNSMVAQLLESIIFIIDAVLPLLRKLPLSIVDELEQDLKQLIVRHSFLTVVHACIKCLCCMSKMAGKGDAVVEQLIQVFLKCLDTQAVVNKQQVGRSLFCLGLLIRYGNILLASSGNKLVDVRRSLSLFMKYLDVDDYSLKVRSLQALGYVLIARPEYMLENNIGKILEGTLSNTADVRIKIQALQNMFEYLLDAESQMETDKVEDNASGHSVRAGHSVPVAAGAGDTNICGGIIQLYWDNILGRCLDSSEQVRQTALKIVEVVLRQGLVHPITCVPYLIALETDPLESNAKLAHHLLMNMNEKYPAFFESRLGDGLQMSFMFMQSVCGSPENVNHKTPSKIPVSGKGKPESDSLTQARLGVSRIYKLIRGNRISRNKFMSSIVRKFDNPRWNKLVIPFLMYCTEVLALLPFTAPDEPLYLIYAINRVVQLRAGPLEANFKAWSSSLLQREGDGTPHGNGMYQRVPHEPILTTQVQSMDLNGTFQQNLDVQPYLVDMTSVDLNGTNHQLPDYPLSHNGGSKVKPHTAGFADSLTFSEDDTEKFQADCLSAIALQLLLKLKRHLKITYSLDDAKCQAYSPSEPPKPGDVISKQSIPFNIGESQFSLPTSPQELIQRYQEFKNALKEDTVDYSLYTANIKRKRPTPRKGRKTGPIPMVGGDFGDDDDEDWAGGARNINFSGGRRANLRSSRQY 1693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00247 1693 PANTHER EXPRESSED PROTEIN-RELATED 13 1684 - -
Car02g00247 1693 Pfam HEAT repeat associated with sister chromatid cohesion 740 781 IPR026003 -
Car02g00247 1693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 532 602 IPR013083 -
Car02g00247 1693 MobiDBLite consensus disorder prediction 16 37 - -
Car02g00247 1693 PANTHER NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED 13 1684 IPR033031 GO:0003682|GO:0010468|GO:0061780
Car02g00247 1693 ProSitePatterns Zinc finger PHD-type signature. 548 591 IPR019786 -
Car02g00247 1693 Pfam PHD-finger 548 593 IPR019787 -
Car02g00247 1693 Pfam Sister chromatid cohesion C-terminus 1233 1430 IPR024986 -
Car02g00247 1693 Gene3D - 719 1192 IPR011989 -
Car02g00247 1693 MobiDBLite consensus disorder prediction 16 43 - -
Car02g00247 1693 SUPERFAMILY FYVE/PHD zinc finger 543 599 IPR011011 -
Car02g00247 1693 ProSiteProfiles Zinc finger PHD-type profile. 545 594 IPR019787 -
Car02g00247 1693 SUPERFAMILY ARM repeat 718 1431 IPR016024 -
Car02g00247 1693 MobiDBLite consensus disorder prediction 1642 1693 - -
Car02g00247 1693 SMART PHD_3 547 592 IPR001965 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00247 546 593 PHD Transcription Factor Family AT5G36670 45.833 1.54e-06 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car02g00247 Nipped-B_C 1.6e-53 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00247 K06672 - gmx:100792021 2627.82