Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00231 ATGGCGGCGGCAACAAAACCCCAACGAACTCCACAGGAAGTGGAAGACATCATCATCCGCAAAATCTTCCACGTCACCATCACTGGAGAATCAACCACCGATTCGAGATTCATCTATCTCGAACTAACCGCCGCCGAGATTCTCAGCGAAGGGAAAGACCTTCTCCTAAACCGCGATTTAATGGAAAGAGTCCTAATCGATCGTCTCTCCGGCGATTTCACCACCTCCGGTACCGGAGACTCGCCGTTTCAGTATCTAATCGATTGTTACAACCGCGCACACGACGAAGGGAAGAAAATAGCTAACATGAAGGATAAAAACCTTAGGTCGGAGATGGAAACGGTTGTGAAGCAAGCTAAGAAACTCTGCGTTTCGTATTGCAGGATTCATCTCGCGAATCCTGAACTCTTCGCGAGTAAGAATTCAAATTCCAACGCTGGCGCGTTACTTCCTTTGATTATATCGGAGTGTGGCGGTGGCGGTGGAATGGGAGTTTTTGGTGGTGGCGGTGTCGGAGTTAAGAGTCCTCCAGGGTTTTTAGATGAGTTTTTTAGGGATCCTGATTTTGAAAGTTTAGATAGAATTTTGAAAGGGTTGTTTGAAGAGTTGAGGGGGAGTGTGATGAAAGTTTCTGTGCTTGGAAATTTTCAGGATTCACTTAGGGCTTTGTTGTTTTTGGTTAGATTACCTGTTGGTGCAAAGTCTCTTGTGAGTCATGAATGGTGGATTCCTAAAGGTGTTTACATGAATGGTCGTGCTATTGAAATGACTAGCATTTTGGGTCCCTTTTTTCATATCAGTGCTCTTCCTGATCAAACTTTTTTCAGGAGTCAGCCTGATGTTGGGCAGCAGTGCTTTTCTGATGCATCAACTCGGAGACCATCTGATTTATTATCTTCATTTACTACCATCAAAACTGTCATGAATACCTTATATGATGGCCTATCTGAAGTACTCCGCAACCTCCTTAGAAGTACTGATACTCGTGAAAATGTACTTGAGTATCTTGCAGAGGTGATCAATTTAAATGCATCCAGGGCTCACATACAGGTTGACCCAATTACTTGTGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCTGTCATGCTTCGCCTCTGTGAACCATTTTTAGATGCAAATTTAACAAAAAGGGATAAAATTGATGCTAAATATGTACACCACTCAAACCGTTTGAAGCTAAGTGGGTTGACTGCCCTTCATGCGTCATCAGAAGAAGTTGCTGAGTGGCTTAATAGTAAAAACCCAGCTGGGGAAATGAATCAGAAACGTCTGCAACAATCTCAAGAGGCCAGTAGTTCTGGTAGTAATAATGCTAGTGAGCTTTCAAATGAAAATTATGCACGTGCAAAATATTCATTTATATGCGAATGCTTCTTTATGACTGCAAGAGTGCTCAACTTGGGGCTTTTGAAAGCATTTTCTGACTTCAAGCACTTAGTTCAGGATATTTCTAGAAGCGAAGATACTCTTTCCACTCTTAAAACTATGCAGGGGCAGTCACCCTCTCCTCAGTTGGAATTGGATATATCTCGACTTGAGAAAGAACTGGAGTTGTACTCGCAGGAAAAGCTTTGTTGTGAAGCTCAGATATTGAGAGATAACACACTTATTCAGAATGCACTTTCCTTCTACCGCTTGAtgattgtctggttggttggcttggttggtGGATTTAAGATGCCTCTACCACCAACATGCCCAATGGAATTTTCCGCCATGCCTGAACATTTTGTAGAAGATGCCATGGAACTTCTAATATTTGCTTCCCGAATTCCAAAGGCCTTAGATGGAGTCGTGCTGGATGAGTTTATGAATTTCATAATTATGTTCATGGGTAGCCCTGATTTTATCAAAAACCCATATCTGAGAGCCAAGATGGTCGAAGTTCTGAACAACTGGATGCCTCGTAGGAGTGGCTCATCTGCTACAGCTACTCTCTTTGAAGGGCACCAACTGTCTCTTGAGTATCTTGTGAGAAATCTTCTGAAACTTTATGTTGACATTGAGTTCACTGGCTCACACACACAGTTCTATGACAAGTTTAACATTCGCCATAATATTGCCGAACTCCTTGAATACCTGTGGAATGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAAGAGGAGGAAAAGGGTGTCTATCTCAATTTCTTAAACTTTCTGATTAATGATAGTATTTATCTTCTTGACGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAAGCTGAGATGTCAAATACTGCTGAATGGGAGCGTCGGCCAGTTCAAGAAAGGCAGGAAAGGACCCGGTTATTCCACTCTCAAGAAAATGTATGTCCATCCTTGGTTGATAGAGTGGCCAGCATGCTTAATTACTTTCTGCTGCAATTGGTGGGCCCACAAAGAAAATCGCTTAGTCTGAAAGATCCTGAAAAATACGAATTTCGTCCAAAGCATTTGCTAAAACAGATTGTGCAAGTATATGTTCATCTGGCTCGAGGTGACACAAATTCCATCTTCCCATCTGCCATTTCAAAGGATGGCCGATCATACAATGATCAGTTGTTTAGCTCTGCTGCAGACGTCCTTCGTAGAATTGGTGAGGATGGAAGATTAATACAGGAATTTATTCAGCTCGGTGCTAAAGCCAAAGTTGCTGCTTCAGAGGCCATGGATGCCGAAGCTACTCTAGGAGAAATACCAGATGAATTCCTTGATCCAATTCAGTACACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAGGATCACGGTTGATCGTCCTGTCATTCAGAGGCATCTTCTCAGTGATAGCACTGATCCATTCAACCGTTCTCATCTTACCGCCGATATGCTGATTCCTGATGATGAACTCAAAGCAAAAATTGAAGATTTTATCAGGTCTCAGGAAATGAAGAAACATGGCGAAGGCCTAAGCTTACAAAGTACCAAGGCCACCATTCAAACCACAAATGGTGGGGAAATGTTGATTGATTAG 3012 0.419 MAAATKPQRTPQEVEDIIIRKIFHVTITGESTTDSRFIYLELTAAEILSEGKDLLLNRDLMERVLIDRLSGDFTTSGTGDSPFQYLIDCYNRAHDEGKKIANMKDKNLRSEMETVVKQAKKLCVSYCRIHLANPELFASKNSNSNAGALLPLIISECGGGGGMGVFGGGGVGVKSPPGFLDEFFRDPDFESLDRILKGLFEELRGSVMKVSVLGNFQDSLRALLFLVRLPVGAKSLVSHEWWIPKGVYMNGRAIEMTSILGPFFHISALPDQTFFRSQPDVGQQCFSDASTRRPSDLLSSFTTIKTVMNTLYDGLSEVLRNLLRSTDTRENVLEYLAEVINLNASRAHIQVDPITCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHHSNRLKLSGLTALHASSEEVAEWLNSKNPAGEMNQKRLQQSQEASSSGSNNASELSNENYARAKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRSEDTLSTLKTMQGQSPSPQLELDISRLEKELELYSQEKLCCEAQILRDNTLIQNALSFYRLMIVWLVGLVGGFKMPLPPTCPMEFSAMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMGSPDFIKNPYLRAKMVEVLNNWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWNVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPVQERQERTRLFHSQENVCPSLVDRVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVQVYVHLARGDTNSIFPSAISKDGRSYNDQLFSSAADVLRRIGEDGRLIQEFIQLGAKAKVAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPDDELKAKIEDFIRSQEMKKHGEGLSLQSTKATIQTTNGGEMLID 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00231 1003 SUPERFAMILY RING/U-box 896 976 - -
Car02g00231 1003 PANTHER UBIQUITINATION FACTOR E4 783 979 IPR045132 GO:0000151|GO:0030433|GO:0034450
Car02g00231 1003 PANTHER - 783 979 - -
Car02g00231 1003 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 903 981 IPR013083 -
Car02g00231 1003 Pfam U-box domain 904 975 IPR003613 GO:0004842|GO:0016567
Car02g00231 1003 ProSiteProfiles U-box domain profile. 903 977 IPR003613 GO:0004842|GO:0016567
Car02g00231 1003 CDD RING-Ubox_UBE4A 906 974 - -
Car02g00231 1003 Coils Coil 509 536 - -
Car02g00231 1003 SMART Ubox_2 907 970 IPR003613 GO:0004842|GO:0016567
Car02g00231 1003 Pfam Ubiquitin elongating factor core 260 785 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Car02g00231 1003 Pfam Ubiquitin elongating factor core 784 887 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Car02g00231 1003 PANTHER - 4 782 - -
Car02g00231 1003 PANTHER UBIQUITINATION FACTOR E4 4 782 IPR045132 GO:0000151|GO:0030433|GO:0034450
Car02g00231 1003 MobiDBLite consensus disorder prediction 425 447 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00231 3 1003 U-box Gene Family AT5G15400 72.970 0.0 1535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00231 K10597 - gmx:100806175 1664.43