Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00208 ATGGGAAGATCACCATGTTGTGACAAAGTTGGTTTAAAGAAAGGACCATGGACTCCAGAAGAAGATCAAAAACTCTTAGCTTATATTGAAGAACATGGTCATGGAAGTTGGCGTGCTTTGCCATCTAAAGCTGGACTTCAAAGATGTGGAAAGAGTTGCAGATTGAGATGGACCAACTATCTTAGGCCTGATATTAAGAGAGGAAAATTCAGTTTGCAAGAAGAACAAACCATTATTCAACTTCATGCTCTCTTAGGGAACAGGTGGTCAGCTATAGCTACACACTTACCAAAGAGAACAGATAATGAAATAAAAAATTATTGGAACACACATCTTAAGAAAAGGTTAACAAAAATGGGAATTGACCCAATTACTCACAAGCCAAAAAATGATACTCTTGTTTCAAATGATGGTCAATCAAAAACAGCTGCAAATCTTAGTCACATGGCCCAATGGGAAAGTGCTCGTCTTGAAGCTGAAGCTAGACTTGTTAGAGAATCAAAAATTCGTTCACATTCAATTCATAATCACCAACTTGGAAATTCTCATCATTTGTTTGCATCTTCATCTTCAAACAACAAGAACAAAGAAGAAGATGAACAAACATTGCTATTTACACCCCCTTCTATGGTTTCATCATCACATTCTCTTGATGTGTTTAAGGTTTGGaataataataataataatGGAGGATGGTTAAGGGCTTCAAATGATCAAGGAAACAATCTTGAGTCTCCTACTTCTACTTTATCTTTTAATGAGAATGTTCCACCAACTATGACTAGTGATGGAGTTGGGGGTGCAAATAACAACATCAATGATCATaatgaaaatgcaaataacaataatgaaaatgaaaatgTAGTATCTATGATTGAATTTGTAGGGACTAATTCAAGTTCATGTGAGACAGGAGTTGTGAAAGAAGAAGGTGGTGATGATCATCATGATATTCAATGGAAAGGTTATGAAAATTCATTGACTTTTACATCTAATCTTCATGAGTTGACTATGTCAATGGAAGGAGAATTGAGTTTACATCATGGAGGTGTTGTTGGAGATGATGTCATTGCTGAAGAAGGGTTTACTAACCTTCTTCTTAAAACAAACTCGGAAGATTTGAGTTTGTCAGATAGTGGAGGAGAATCTAACACCGGTGATGGCGATGGTCGAAGTGGTAGTGAATTCTACGAAGATAACAATAACTATTGGAATAGTATTCTTAATTTAGTCAATTCTTCTCCCTCTCATTCACCAATGTTTTGA 1266 0.3507 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPITHKPKNDTLVSNDGQSKTAANLSHMAQWESARLEAEARLVRESKIRSHSIHNHQLGNSHHLFASSSSNNKNKEEDEQTLLFTPPSMVSSSHSLDVFKVWNNNNNNGGWLRASNDQGNNLESPTSTLSFNENVPPTMTSDGVGGANNNINDHNENANNNNENENVVSMIEFVGTNSSSCETGVVKEEGGDDHHDIQWKGYENSLTFTSNLHELTMSMEGELSLHHGGVVGDDVIAEEGFTNLLLKTNSEDLSLSDSGGESNTGDGDGRSGSEFYEDNNNYWNSILNLVNSSPSHSPMF 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00208 421 CDD SANT 69 112 IPR001005 -
Car02g00208 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car02g00208 421 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car02g00208 421 CDD SANT 16 61 IPR001005 -
Car02g00208 421 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Car02g00208 421 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car02g00208 421 Gene3D - 13 66 - -
Car02g00208 421 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car02g00208 421 MobiDBLite consensus disorder prediction 373 394 - -
Car02g00208 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car02g00208 421 SMART sant 13 63 IPR001005 -
Car02g00208 421 SMART sant 66 114 IPR001005 -
Car02g00208 421 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Car02g00208 421 MobiDBLite consensus disorder prediction 177 192 - -
Car02g00208 421 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 414 - -
Car02g00208 421 PANTHER TRANSCRIPTION FACTOR MYB106 1 414 - -
Car02g00208 421 MobiDBLite consensus disorder prediction 177 200 - -
Car02g00208 421 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00208 Car-Chr2 2118658 2122139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00208 1 421 MYB Transcription Factor Family AT3G01140 53.774 2.45e-126 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car02g00208 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00208 K09422 - gmx:100101835 550.051