Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00202 ATGGTCCCAATTCTGTCAGCTTTGATGTTGACTGACCTCTCTATTTATTCCAACTCCAATCTCCCTTTCATTTCCCCTCAAAATCTCTTCACCACCTTCTTGAAATTGTATAAAATGTCTCTTCTTGGATTTCTTGGAATTATTTTCTCCATGATTTCATGTGTTTATGGTTATGGTAACAATTGGGGTTGGATTAATGCACATGCAACTTTCTATGGTGGCAGTGATGCTTCTGGCACAATGGGTGGGGCATGTGGATATGGAAATTTGTACAGTCAAGGTTATGGGACTAATACAGCAGCACTTAGCAGTGCATTATTCAACAATGGTTTGAGTTGTGGTGCATGCTATGAAATTAAATGTGTTAATGATCCAAAATGGTGTCTCCCTAGTTCCATTGTTGTCACTGCCACTAATTTCTGTCCCCCTGGTGGTTGGTGTGACCCTCCTAATCATCATTTTGATCTCTCTCAACCTGTTTTTCAACACATTGCTCAATATAAAGCTGGTATTGTTCCTGTTGTTTATAGAAGGGTAAGGTGTAGAAGAAGAGGTGGAATAAGATTCACTATAAATGGCCATTCTTATTTCAACTTAGTCCTTGTGACTAATGTTGGAGGTGCTGGTGATGTTCATTCTGTTTCCATCAAAGGTTCAAGGACTAGATGGCAAGCTATGTCAAGGAATTGGGGGCAAAATTGGCAAAGCAACTCTTATTTGAATGGACAAAGTCTTTCATTTGTAGTCACAACTAGTAATGGTCATAGTATTGTGTCATTTAATGTTGCCCCATCTAGTTGGTCCTTTGGACAAACCTACGTTGGAAGACAATTCATCTACTAA 843 0.3915 MVPILSALMLTDLSIYSNSNLPFISPQNLFTTFLKLYKMSLLGFLGIIFSMISCVYGYGNNWGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSSALFNNGLSCGACYEIKCVNDPKWCLPSSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSIVSFNVAPSSWSFGQTYVGRQFIY 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00202 280 Gene3D - 55 182 IPR036908 -
Car02g00202 280 PRINTS Expansin signature 94 108 IPR002963 GO:0009664
Car02g00202 280 PRINTS Expansin signature 121 132 IPR002963 GO:0009664
Car02g00202 280 PRINTS Expansin signature 133 143 IPR002963 GO:0009664
Car02g00202 280 PRINTS Expansin signature 144 161 IPR002963 GO:0009664
Car02g00202 280 PRINTS Expansin signature 161 174 IPR002963 GO:0009664
Car02g00202 280 PRINTS Expansin signature 185 197 IPR002963 GO:0009664
Car02g00202 280 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Car02g00202 280 PRINTS Expansin signature 232 253 IPR002963 GO:0009664
Car02g00202 280 PRINTS Expansin signature 261 277 IPR002963 GO:0009664
Car02g00202 280 Gene3D - 186 278 IPR036749 -
Car02g00202 280 SUPERFAMILY Barwin-like endoglucanases 63 204 IPR036908 -
Car02g00202 280 SMART dpbb_1 99 176 IPR007112 -
Car02g00202 280 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 196 275 IPR007117 -
Car02g00202 280 PANTHER EXPANSIN 37 278 - -
Car02g00202 280 Pfam Expansin C-terminal domain 187 264 IPR007117 -
Car02g00202 280 SUPERFAMILY PHL pollen allergen 183 274 IPR036749 -
Car02g00202 280 PRINTS Expansin/Lol pI family signature 63 78 IPR007118 GO:0005576
Car02g00202 280 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Car02g00202 280 PRINTS Expansin/Lol pI family signature 103 121 IPR007118 GO:0005576
Car02g00202 280 PRINTS Expansin/Lol pI family signature 169 185 IPR007118 GO:0005576
Car02g00202 280 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Car02g00202 280 PRINTS Expansin/Lol pI family signature 261 275 IPR007118 GO:0005576
Car02g00202 280 Pfam Lytic transglycolase 99 176 IPR009009 -
Car02g00202 280 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 82 186 IPR007112 -
Car02g00202 280 PANTHER EXPANSIN-A15 37 278 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00202 Car-Chr2 2046807 2048933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00202 38 278 Expansin Gene Family AT2G03090 76.800 8.49e-140 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00202 K20628 - gmx:100790170 442.965