Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00196 ATGGAGGTTATAACAACACCAACcacaaacacaaacacaaacacaaacaTTACATCTTTAACAAGTTCGAAATCACCAGAGCCCGAATCAGAAAACCCGACCCGAATCCAACAACTACCCACAAACACAACAACCTCAAACATAACAAAGCCAATAACTTTTTCAAATGGGGTTCTTAAACGTCTCAACCCAAACACAAacaaccaccacaacaaccaccatgctcaaccaccaATGGTTGTTACTTACAAAGAATGTCTCAAAAACCACGTGGCAACTTTAGGTGGTCACGCGCTTGACGGTTGTTGTGAATTCATGCCGTCGCCAACCGCCACCTCCGACGACCCAACATCCATAAAATGCGCCGCATGCGGTTGTCACCGGAATTTTCACCGCCGTGAACCGGAAGAACCAATTTCAACCGTTTTTGAATATCAACCTcaccaccgccaccatccaccgccgccacTTTTTCAGTCCCGGAGTCCTAGTTCGCCGTCACCGCCGCCGATCTCATCATACCCATCAGCACCTCATATGCTGTTAGCACTCTCCGGCGCCGGAGTTGGTCTCTCAATCCCACCGGAAAACACGGCGGCGCCGGTAAACCTTAGCTCTCCGATGGGAACTAATAGAAAAAGATTTAGAACAAAGTTCACACAAGAACAGAAGGAAAAGATGCATGAATTTGCTGAAAGTGTTGGGTGGAAGATGCAGAAAAGAGATGAAGAAACGGTTAATGGATTTTgcaatgaagttggtgttgatagaagtgttctcaaagtttggatgcataacaataagaacactttgggaagaaaattGTCAGATCATGCCGGAGACGGTGCCGGAGCAGCCGTGGACGGTGTCTCCGGTGGTGGTTGTGCTGTTAATGAGAATGATGAGAATCATAATAATGGGACTAATGTTGCTGCTAGTACTACTAATGGGtcttcttcttcttcttga 969 0.3787 MEVITTPTTNTNTNTNITSLTSSKSPEPESENPTRIQQLPTNTTTSNITKPITFSNGVLKRLNPNTNNHHNNHHAQPPMVVTYKECLKNHVATLGGHALDGCCEFMPSPTATSDDPTSIKCAACGCHRNFHRREPEEPISTVFEYQPHHRHHPPPPLFQSRSPSSPSPPPISSYPSAPHMLLALSGAGVGLSIPPENTAAPVNLSSPMGTNRKRFRTKFTQEQKEKMHEFAESVGWKMQKRDEETVNGFCNEVGVDRSVLKVWMHNNKNTLGRKLSDHAGDGAGAAVDGVSGGGCAVNENDENHNNGTNVAASTTNGSSSSS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00196 322 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 6 282 - -
Car02g00196 322 MobiDBLite consensus disorder prediction 298 322 - -
Car02g00196 322 Pfam ZF-HD protein dimerisation region 81 135 IPR006456 -
Car02g00196 322 Gene3D - 202 272 - -
Car02g00196 322 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 212 269 IPR006455 -
Car02g00196 322 MobiDBLite consensus disorder prediction 1 50 - -
Car02g00196 322 MobiDBLite consensus disorder prediction 146 174 - -
Car02g00196 322 SUPERFAMILY Homeodomain-like 203 273 IPR009057 -
Car02g00196 322 MobiDBLite consensus disorder prediction 152 174 - -
Car02g00196 322 MobiDBLite consensus disorder prediction 291 322 - -
Car02g00196 322 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 6 282 - -
Car02g00196 322 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 82 134 IPR006456 -
Car02g00196 322 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 83 134 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00196 Car-Chr2 1988584 1990060 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00196 1 268 ZF-HD Transcription Factor Family AT5G15210 49.819 2.93e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Car02g00196 ZF-HD_dimer 3.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00196 - - jre:108985975 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00196 02 1988584 1990060 Car03g00125 03 2701573 2703149 PCT