Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00193 ATGAGGAAGAGACAAGTAGTTGTGAGAAGAACATCATCATGTGAAGATCAACAAAGAAGTGTGAAATATGGAGAGTGTCAAAAGAATCATGCAGCTAATGTTGGAGGTTATGCTGTTGATGGTTGTAGAGAATTTATGGCAAGTGGTGAAGAAGGTACAAGTGTTGCTTTAATTTGTGCTGCTTGTGGTTGTCATAGAAACTTTCACAAAAGAGAAGTTGAAAATGAAGTTGTTTCTGAATGTTCTTCCCCTCACTCTAATGGTACTTGA 270 0.3741 MRKRQVVVRRTSSCEDQQRSVKYGECQKNHAANVGGYAVDGCREFMASGEEGTSVALICAACGCHRNFHKREVENEVVSECSSPHSNGT 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00193 89 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 6 84 - -
Car02g00193 89 PANTHER BNAA09G44460D PROTEIN 6 84 - -
Car02g00193 89 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 22 73 IPR006456 -
Car02g00193 89 Pfam ZF-HD protein dimerisation region 21 73 IPR006456 -
Car02g00193 89 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 23 72 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00193 Car-Chr2 1903478 1904457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00193 1 88 Zinc finger-homeobox gene family AT3G28917 66.667 6.49e-39 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Car02g00193 ZF-HD_dimer 5.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00193 - - aprc:113868039 145.976