Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00190 ATGGAGGAAAGGAGTAAGATGGATAACTATGATGAAGTTGATGATGTCATATTGCCAGGTTTTCGTTTTCGTCCAACAGATCAAGAACTTATTGGTTTTTACCTCAAGAAAAAAATTCAGCAAAAGTCTCTTCCTATTGAACTTATAAAGCAAGTTGATATTTACAATTATGAACCATGGGATCTTCCAAAGCTGGCTAGTACAAGTAGTGAAAAAGAATGGTATTTCTACTGTCCAAGGGAGAGAAAATATAAAAATAGTTCAAGACCAAACAGAGTAATTACTAGAAATAATGGTAAGTCAATTGGATATTGGAAAGCAACTGGAACAGACAAAGCTATATACTCATCAGATGGAAAATGCATTGGTTTGAAAAAATCACTTGTGTTCTACAAAGGCAGAGCTTCCAATGGGAATAAAACTGATTGGATGATGCATGAGTTTAGGCTACCTTGTATTTCTAACTCAACTTCTCCTAAAAAGTTGTTTGATAAAAGCTTCTCCCCAAATGATTCATGGGCAATATGTAAAATCTTTGAGAAACCTACTTCTTCATCAATGGTTCAAAAAGCTTTATCTCACCCTTGGATATCTCAATTACCTGGAGGAAGAGTTTCTGAATTACTCACACAAACTTCAAACACCAACCAATTATGTTCACAAAGTAATATATCTTTATCCACAAAAACAGAACAAGAATCATCAACCATCAAATTTTGTAGCAACAACACCAACAATTTCTCACCTTCATATTTTCCAAATTACACAATTTCCAAATCCTCACAAATTCCTAATGGAGACAATGTTGTTCATAATAACATAATGTTATACAACACAACTGAAGCCACAGATTCTACAAAGTGCCCAATTGATACAAGTTCAATTATTTCCAATACTAACTATATTGGTCTTGAAGATGCAAATAATCAATATAGTAATTTCTCAATTAATCTACCTAAAGATATTCAACCAAACATTGGAACAGAATTAGAAGAACAAGATTGGAAGAAGAATCCATACTATTGGGAAACTATAGGAAGAACAATTGAATTTCCCTTCAATTTGTCTCCAAATTATGATGCTTTGAGGGAAAATTTTACATGGGACTCTCTTCCTTGCACTAGTGAAATGTCTACAAACTATGTCACCAGTGTAGCTAAATGCTACACGTAG 1173 0.3342 MEERSKMDNYDEVDDVILPGFRFRPTDQELIGFYLKKKIQQKSLPIELIKQVDIYNYEPWDLPKLASTSSEKEWYFYCPRERKYKNSSRPNRVITRNNGKSIGYWKATGTDKAIYSSDGKCIGLKKSLVFYKGRASNGNKTDWMMHEFRLPCISNSTSPKKLFDKSFSPNDSWAICKIFEKPTSSSMVQKALSHPWISQLPGGRVSELLTQTSNTNQLCSQSNISLSTKTEQESSTIKFCSNNTNNFSPSYFPNYTISKSSQIPNGDNVVHNNIMLYNTTEATDSTKCPIDTSSIISNTNYIGLEDANNQYSNFSINLPKDIQPNIGTELEEQDWKKNPYYWETIGRTIEFPFNLSPNYDALRENFTWDSLPCTSEMSTNYVTSVAKCYT 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00190 390 SUPERFAMILY NAC domain 16 181 IPR036093 GO:0003677|GO:0006355
Car02g00190 390 Gene3D NAC domain 26 185 IPR036093 GO:0003677|GO:0006355
Car02g00190 390 Pfam No apical meristem (NAM) protein 19 150 IPR003441 GO:0003677|GO:0006355
Car02g00190 390 ProSiteProfiles NAC domain profile. 17 181 IPR003441 GO:0003677|GO:0006355
Car02g00190 390 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 385 - -
Car02g00190 390 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 7 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00190 Car-Chr2 1873300 1877525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00190 8 245 NAC Transcription Factor Family AT1G26870 55.000 4.73e-82 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car02g00190 NAM 1.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00190 - - mtr:MTR_6g011860 523.087