Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00184 ATGTCTAGCAGAAGATCAAGGCAACAATCTTCATCTTCAAGAATTTCTGATGAACAAATCATCGAACTTGTTTCCAAGTTGCGTCAACTTGTTCCTGAGATTCGTCATAGGCGTTCCGATAAGGTATCAGCATCAAAGGTCCTACAAGAAACATGTAACTACATAAGAACCTTAAACAGAGAGGTGGATGATTTAAGTGAAAGATTGTCTCAGTTATTAACCACAATTGATGCTGATAGTCCAGAGGCTAATATTATAAGAAGCTTAATTAATCAATAA 279 0.3584 MSSRRSRQQSSSSRISDEQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRTLNREVDDLSERLSQLLTTIDADSPEANIIRSLINQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00184 92 Gene3D - 2 86 IPR036638 GO:0046983
Car02g00184 92 PANTHER TRANSCRIPTION REGULATOR 1 90 - -
Car02g00184 92 Coils Coil 48 75 - -
Car02g00184 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Car02g00184 92 CDD bHLH_AtPRE_like 15 75 - -
Car02g00184 92 Pfam Helix-loop-helix DNA-binding domain 24 58 IPR011598 GO:0046983
Car02g00184 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Car02g00184 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00184 Car-Chr2 1774397 1778310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00184 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 75.000 8.40e-37 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car02g00184 HLH 0.00014 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00184 - - gmx:100796852 137.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00184 02 1774397 1778310 Car03g00113 03 2400111 2402137 PCT