Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00182 atggcttttccaccttctcatactttcatctttcaAACtcatgaagatcatcatcatcatcatgaccaccttctttcttcttcaacaACTTCTCTTAACTCCTTCCCTTCCTTTCCAACTCATCATCATTTCCAAGGTGGTAGTGGTGCACCTTTCATGATGAAGAGATCTATGTCATTTTCAGGCATAGAAaacaaccacaatcaaaactacaacaataacaataaGTGTGAAGAATTAGTACATGGAGATGAAGATCAATTATCAGATGAAGAAGGGTACTCACAAATTGGTGAAAAGAAGAAGAGATTGAGTTTGGAACAAGTGAAGGCACTTGAGAAGAGTTTTGAGATTGGTAACAAGCTTGAACCTGAAAGGAAAATGCAATTAGCTAAAGCTTTGGGGTTACAACCTAGACAAGTTGCTATATGGTTTCAAAATAGAAGAGCAAGGTGGAAAACTAAACATCTTGAGAAAGAATATGAAATTCTTAAGAAACAATTTGAAGCTCTTAAGGCTGATAATGATATCCTTAAGGCTCAAAACAACAAATTACATGCAGAGCTACAAACTCTAAAGAAAAGGGATTGCTTTGAAAATGGAACAATTAGTTTCAAAAAAGAAAATGAGGGTTCATGGAGCAATGGAAGTGATAATAGCTCAGATATTAATCTAGGCCTATCAAGAACACCAATGATGAATAGTCCTGTTTCTTCACAAAATGGTAAAAGTATTTTACCAAATTCACTTAAGCCTACAAGCATGACACAACTACTTCAATGCTCTTCAAGATCAGATCTTCAAGATGAAAGCTTTTGCAACATGTTTCACAATATTGATGACCAACAGAATTTTTGGCCTTGGCCTGATCAACAACATCATTTCCATTGA 891 0.3086 MAFPPSHTFIFQTHEDHHHHHDHLLSSSTTSLNSFPSFPTHHHFQGGSGAPFMMKRSMSFSGIENNHNQNYNNNNKCEELVHGDEDQLSDEEGYSQIGEKKKRLSLEQVKALEKSFEIGNKLEPERKMQLAKALGLQPRQVAIWFQNRRARWKTKHLEKEYEILKKQFEALKADNDILKAQNNKLHAELQTLKKRDCFENGTISFKKENEGSWSNGSDNSSDINLGLSRTPMMNSPVSSQNGKSILPNSLKPTSMTQLLQCSSRSDLQDESFCNMFHNIDDQQNFWPWPDQQHHFH 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00182 296 Coils Coil 147 195 - -
Car02g00182 296 SMART HOX_1 98 159 IPR001356 GO:0003677
Car02g00182 296 CDD homeodomain 100 156 IPR001356 GO:0003677
Car02g00182 296 Pfam Homeodomain 100 153 IPR001356 GO:0003677
Car02g00182 296 ProSiteProfiles 'Homeobox' domain profile. 95 155 IPR001356 GO:0003677
Car02g00182 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 296 IPR045224 GO:0003700
Car02g00182 296 Pfam Homeobox associated leucine zipper 155 194 IPR003106 GO:0006355|GO:0043565
Car02g00182 296 PRINTS Lambda-repressor HTH signature 126 135 IPR000047 GO:0003677
Car02g00182 296 PRINTS Lambda-repressor HTH signature 135 151 IPR000047 GO:0003677
Car02g00182 296 Gene3D - 93 170 - -
Car02g00182 296 ProSitePatterns 'Homeobox' domain signature. 130 153 IPR017970 GO:0000981|GO:0006355
Car02g00182 296 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 296 - -
Car02g00182 296 SUPERFAMILY Homeodomain-like 94 156 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00182 Car-Chr2 1739671 1743073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00182 1 290 Homeobox Transcription Factor Family AT5G15150 48.726 5.22e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car02g00182 Homeodomain 4.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00182 K09338 - gmx:100790803 408.683