Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00175 ATGGAAATGATGATAAAAATTGAGGAGAACAAAAGAACTAGCTGCATGTCCATGGAAGACTATGATTCTCAAGTAATTGCCAAGAGACGTCGAAGAGAGCCTGCGGTAGCTGCACTTACTTCTGAGGATAACCAAGATCAGAAGCAACATGTTTATCAAAATTCTACTACAAGCACAACAAAGCGAAGTTCGAGATTTCGCGGTGTTAGCAGACATAGATGGACGGGTCGATATGAAGCTCACTTATGGGACAAGCTCTCTTGGAACATGACCCAAAAGAAGAAAGGGAAGCAAGTTTATCTTGGGGCTTATGATGAAGAAGAATCAGCAGCCAGAGCATATGATTTAGCTGCAATAAAGTATTGGGGAACATTGACTGTCACCAATTTTCCTGTCTCAGATTATGAGAAACAGGTAGAGTTAATGCAAACTATGACAAAAGAAGAGTATTTAGCAACTTTAAGGAGGCACCACCATAACGGTAGATGGGAAGCACGGATCGGAAGGGTTTTTGGAAACAAGTATCTCTACCTTGGCACCTACAGCACCCAAGAAGAAGCTGCTCGTGCTTATGACATAGCAGCCATTGAGTACAGAGGAAGCCATGCTATAACCAACTTCGACTTGAGTACTTACATGAGGTGGTTAAAATCTTCAGTGGGAAATATCTCAGAAACAAAACTTGAAAAAATGGAAGTGCCAGAATCTCAGACAGTGGCATCCCTATCTAACTATTCTCCAATAGAGGAGCCAAAATCCTTGGCCCTCCACAGCAGTACCTATAATTCAGATTATCTGAATTCCCCTCAAAAGTATGCAGTGTTTGAAGATAAAGCATACCAAATCTCCAGCACTAAGTCGTCTTCTTCTCCCACTGCACTTGGGCTCCTTTTCCGCTCAACAATATTTAGAGACTTAGTTGAAAAGAATTTGAACATATCTGGAGATGAAACTAATGGGGAAGACACAAAGGGTCAACAGCAACAGACAGCAAGTGATGATGATGAGTTGGATGAGATCTTCTGTGATGGAATTGGGGATATCCCCTTTCTGAAACTCCAAAAGACAACTTAG 1074 0.4162 MEMMIKIEENKRTSCMSMEDYDSQVIAKRRRREPAVAALTSEDNQDQKQHVYQNSTTSTTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNMTQKKKGKQVYLGAYDEEESAARAYDLAAIKYWGTLTVTNFPVSDYEKQVELMQTMTKEEYLATLRRHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGSHAITNFDLSTYMRWLKSSVGNISETKLEKMEVPESQTVASLSNYSPIEEPKSLALHSSTYNSDYLNSPQKYAVFEDKAYQISSTKSSSSPTALGLLFRSTIFRDLVEKNLNISGDETNGEDTKGQQQQTASDDDELDEIFCDGIGDIPFLKLQKTT 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00175 357 SUPERFAMILY DNA-binding domain 156 210 IPR016177 GO:0003677
Car02g00175 357 SMART rav1_2 65 137 IPR001471 GO:0003700|GO:0006355
Car02g00175 357 SMART rav1_2 156 214 IPR001471 GO:0003700|GO:0006355
Car02g00175 357 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 345 - -
Car02g00175 357 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 8 345 - -
Car02g00175 357 MobiDBLite consensus disorder prediction 40 64 - -
Car02g00175 357 ProSiteProfiles AP2/ERF domain profile. 149 208 IPR001471 GO:0003700|GO:0006355
Car02g00175 357 Gene3D AP2/ERF domain 64 133 IPR036955 GO:0003700|GO:0006355
Car02g00175 357 Gene3D AP2/ERF domain 153 210 IPR036955 GO:0003700|GO:0006355
Car02g00175 357 MobiDBLite consensus disorder prediction 313 336 - -
Car02g00175 357 ProSiteProfiles AP2/ERF domain profile. 65 131 IPR001471 GO:0003700|GO:0006355
Car02g00175 357 Pfam AP2 domain 155 200 IPR001471 GO:0003700|GO:0006355
Car02g00175 357 Pfam AP2 domain 64 123 IPR001471 GO:0003700|GO:0006355
Car02g00175 357 SUPERFAMILY DNA-binding domain 64 133 IPR016177 GO:0003677
Car02g00175 357 MobiDBLite consensus disorder prediction 38 66 - -
Car02g00175 357 PRINTS Ethylene responsive element binding protein signature 190 210 IPR001471 GO:0003700|GO:0006355
Car02g00175 357 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Car02g00175 357 MobiDBLite consensus disorder prediction 313 327 - -
Car02g00175 357 CDD AP2 66 133 IPR001471 GO:0003700|GO:0006355
Car02g00175 357 CDD AP2 156 210 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00175 Car-Chr2 1681197 1683675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00175 58 262 AP2-EREBP Transcription Factor Family AT5G57390 51.570 8.51e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Car02g00175 AP2 3.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00175 - - ahf:112716370 479.559