Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00173 ATGAGCAATGAGATCGGACAGAAACCTCCACCGTCAATACTCGTTGGCAGATTCAAGGCTCTGTTGAAGCAACGTGAAGATGATCCAAGGCTTAGAAATTCACAACCTCCTTCAACTGAAGAAATTGTTCAGATTTACGAATTGTTATTGTCGGAACTCACGTGTAATGTGAAACCTATCATCACTGATCTCACTATCATTGCTGAACAACATAGGGAACATGCTAAAGGAATCGCTTATGCTATTTGCGCTCGTATTCTTGAGGTGTCAGCAGATCAAAAGCTTCCTTCACTCTATCTCCTGGACAGTATTGTGAAGAATGTTGGCCAGGAATATGTTCGATACTTCTCCTTACGTCTACCCGAAGTTTTCTGCGAGGCATACAGACAAGTTCAACCAAGTTTGCATTCTGCTATGCGACATCTCTTTGGTACCTGGTCAAAAGTCTTCCCTCCCTCCGTCTTACAGAAGATTGAAGTGCAATTGCAATTTTCTCAAGCAGTTAATAATCAACCATCCAGTGTTAATTCCCTCAGGGCTTCTGAATCTCCTCGACCAATTCATGGGATACATGTTAACCCAAAATACATAAGACAGATGGAACGCTCTACTTCAATTATGGATGGTGTTGGAGGTGAAAGGTTAGACTCAACAGGAACTGTAGGAAATGCAAATTTTGGCCTTGTAGGTAGTAAGATTCATCAATTTGTGCCAGGTAGAGTAGAAAGATCCTCTTCACCATCAAGAATTGGACTTGATAGGCATATGCCCTCATATATGGATGAATATGTAGCTGAAAATTCTGCTGTCAGGACAGTTGAGAGGGAATCTTCTCATCTTGCTGTTGATCATGGACTAGCTAAAGGATTAGGTAGGGAAGAAGAGTTGGGTGAGTGGCCGCGGAAGCAGTTTTCTGGTGATGGTCGGAAGAGGTTTCAAGCTTCTATGACATACAATCTTAGTAATGGACAACTGCGTCAAAATCCAAGAGCTCTAATTGATGCCTATGGTAGTGACAAAAGCCAAGAAACTTCTAGCAGTAAGCCTTTGTTAGTTGAACGGATGGGTAGAAATGGTATTGATAAGGGTTTGACAACATCGTGGCAGAATACTGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCAACACTAGTAGACCATAGTAGGAATAGTGGTATCCTGCAATCAACTATTGGTTTCTCCTCAGAAAAGCCTGTTACTGTTGCAACCAGTGCAACTTCTTCGGTGTCAAGGATGTTTCCTGGTCTCAAGTCTAATATTGAGTACCGTCCACCAGTCTTGCCGGCAACTTTCGAAGCAAGACACTCTCTAAATATGCACGGTCTTCGCCCTCCCAGCTTAAATCCTGTATTTCCATTGAAGAATCCTGTTAGGAATCCATTTGAATCAATAAATGCTAATGGTAACATTGTGAGTCATGGTCTAATTAGACCTTTTCCTATACATGAACAATCGTTGCATAGTGTTGAGAACAATGACATCAGTAAAAGAAACCTGCATCAGTTACCTAATCAGCTAGGTGGTCTGATTTCATCTAACCCGCCAAACAGTGGACCAACACCACAATTACAGTTTTTTCCATCTCAGGATCCAGCTGCATCACAATTTACTTATAGGAGCTCTTTGCAAGGACATGGTGCTGCTATTAGTACCCCCATGCCAAATGCACGACCTGTTATGCCACTCCCTTTGCCAGGCCAGAGAATCGCAAACAACTCTTTACATTTCCAGGGGGGAGCTTTGCGACCTTTACCTCCAACCGGCCCACATGCTCCATCCCAGATGTTACCTCATCCCAATCCTAGTCCTTTTGTGTCAAGCCAACAGCCAAGTGTTGGATATTCTAATTTGATTAGTTCACTCATGGCCCAAGGTGTAATCTCATTGGCTAATCAAGCCCCTACACAGGATTTTGTTGGAATTGAGTTTGATCCGGATATTCTGAAGGTTCGTCATGAATCTGCAGTCAGTAGCTTATATGGTGATCTTCCTAGACAGTGCACAACTTGTGGTCTCCGATTCAAATCCCAAGATGAGCACAGCAGTCACATGGATTGGCATGTGACTAAGAATCGTATGTCTAAAAACCGTAAACAGAAGCCCTCTCGCAAGTGGTTTGTGAGTGAGAGCATGTGGCTTAGTGGTGCAGAGGCATTGGGAACTGAATCAGCTCCAGGATTTTTGCCAACCGAAACCACTGAGGAAAAGAAAGAAGATGAAGAGTTGGCAGACCAGAATACATGTGCATTATGTGGAGAACCTTTCGATGAGTTTTACAGTGATGAAACAGAGGAGTGGATGTATAGAGGAGCTGTATACCTTAATGCGCCTAATGGGATAACGGCAGGCATGGACAGGTCGCAGTTAGGTCCTGTTATTCATGCTAAATGCAGATCCGAATCTACTACGTCCCCATCCGAAGATTTTGTGATGGATGAAGGGGGCACCTTTGAAGAAGGCAATCCAAGAAAACGAATGCGGGGCTGA 2511 0.4341 MSNEIGQKPPPSILVGRFKALLKQREDDPRLRNSQPPSTEEIVQIYELLLSELTCNVKPIITDLTIIAEQHREHAKGIAYAICARILEVSADQKLPSLYLLDSIVKNVGQEYVRYFSLRLPEVFCEAYRQVQPSLHSAMRHLFGTWSKVFPPSVLQKIEVQLQFSQAVNNQPSSVNSLRASESPRPIHGIHVNPKYIRQMERSTSIMDGVGGERLDSTGTVGNANFGLVGSKIHQFVPGRVERSSSPSRIGLDRHMPSYMDEYVAENSAVRTVERESSHLAVDHGLAKGLGREEELGEWPRKQFSGDGRKRFQASMTYNLSNGQLRQNPRALIDAYGSDKSQETSSSKPLLVERMGRNGIDKGLTTSWQNTEEEEFDWEDMSPTLVDHSRNSGILQSTIGFSSEKPVTVATSATSSVSRMFPGLKSNIEYRPPVLPATFEARHSLNMHGLRPPSLNPVFPLKNPVRNPFESINANGNIVSHGLIRPFPIHEQSLHSVENNDISKRNLHQLPNQLGGLISSNPPNSGPTPQLQFFPSQDPAASQFTYRSSLQGHGAAISTPMPNARPVMPLPLPGQRIANNSLHFQGGALRPLPPTGPHAPSQMLPHPNPSPFVSSQQPSVGYSNLISSLMAQGVISLANQAPTQDFVGIEFDPDILKVRHESAVSSLYGDLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSESMWLSGAEALGTESAPGFLPTETTEEKKEDEELADQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGITAGMDRSQLGPVIHAKCRSESTTSPSEDFVMDEGGTFEEGNPRKRMRG 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00173 836 Pfam CID domain 56 158 IPR006569 -
Car02g00173 836 ProSiteProfiles CID domain profile. 38 166 IPR006569 -
Car02g00173 836 SUPERFAMILY ENTH/VHS domain 38 163 IPR008942 -
Car02g00173 836 MobiDBLite consensus disorder prediction 593 607 - -
Car02g00173 836 Gene3D - 32 163 IPR008942 -
Car02g00173 836 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 12 811 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Car02g00173 836 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 12 811 - -
Car02g00173 836 SMART 558neu5 41 163 IPR006569 -
Car02g00173 836 MobiDBLite consensus disorder prediction 585 616 - -
Car02g00173 836 MobiDBLite consensus disorder prediction 730 749 - -
Car02g00173 836 CDD CID_Pcf11 46 163 - -
Car02g00173 836 ProSitePatterns Zinc finger C2H2 type domain signature. 675 695 IPR013087 -
Car02g00173 836 MobiDBLite consensus disorder prediction 512 538 - -
Car02g00173 836 MobiDBLite consensus disorder prediction 805 836 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00173 Car-Chr2 1669602 1674451 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00173 613 835 C2H2 Transcription Factor Family AT4G04885 67.105 2.98e-99 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car02g00173 CID 1.5e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00173 K14400 - fve:101292683 685.641