Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00149 ATGGGAAGGCCTCCATGTTGTGATAAATCCAATGTGAAAAGGGGTTTATGGACTCCTGAAGAAGATGCTAAAATACTTGCTTATGTATCTAATCATGGAATTGGAAATTGGACATTGGTTCCAAAGAAAGCAGGGTTGAATAGATGTGGTAAGAGTTGCAGGCTAAGATGGACAAATTACCTAAGACCTGATCTCAAGCATGACAGTTTTACACTTCAAGAAGAAGAGCTCATTATTAGTCTTCATGAAGCTATAGGAAGCAGATGGTCTTTAATTGCAAAAAGGCTACCTGGTAGAACAGACAATGATGTCAAGAACTATTGGAATACAAAACTAAGAAAGAAGCTTATGAAAATGGGAATTGATCCAATAACTCATAAGCCAGTTTCACAAGTCCTTTCTGACTTGGGAAGCATTAGTAGCCTCTCAAAGAATGAAAACTTGATGATGAAAAACATGATACCAACAAGAATTGAACCTTCAAATTCCAAAAAGAACTTAATTTTGGAACAAAAACAAGAGGAACAAGCTCAACCATTGGAACATCAAGTGCAATATCATCAAGTTCAACATGTCTTAAGTGAAGTTGCATCTTCAAGTTCATCTACGTCTTCTTCTAATCTAACAAGGTTGAATTTACCAAATTCCTACTCTTGCAACAAAACTTCATCACAAGCTCAAATGAACCCTACTTGTTCTAGCTTTGATTGGAGTGAATTTCTTCACAGTGATGACCCTTTTATGTTTCAAGAGCTTCAACAATGTGACATACAAAGGGTTATGTCATCACTGAATTTCTCAAGTTTAATGCAAAGTGAAGGTGAAATTTTTAATGATTCTAATAGCAAACTTGCAAGTGAAGATTTTGATGATGTTGATTGTGTTGCAAGTAAGGAATATCAAATCAATAACCAATTTGACCAAGGACATTCATTTTCAGGGAATTCATTTGTGGACGGTATTTTGAACAAGGATAGTGAGATAATAAAGGCAACTTTTCCTTATACTTTTGATTATTAA 1020 0.349 MGRPPCCDKSNVKRGLWTPEEDAKILAYVSNHGIGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHDSFTLQEEELIISLHEAIGSRWSLIAKRLPGRTDNDVKNYWNTKLRKKLMKMGIDPITHKPVSQVLSDLGSISSLSKNENLMMKNMIPTRIEPSNSKKNLILEQKQEEQAQPLEHQVQYHQVQHVLSEVASSSSSTSSSNLTRLNLPNSYSCNKTSSQAQMNPTCSSFDWSEFLHSDDPFMFQELQQCDIQRVMSSLNFSSLMQSEGEIFNDSNSKLASEDFDDVDCVASKEYQINNQFDQGHSFSGNSFVDGILNKDSEIIKATFPYTFDY 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00149 339 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car02g00149 339 CDD SANT 69 112 IPR001005 -
Car02g00149 339 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car02g00149 339 CDD SANT 17 61 IPR001005 -
Car02g00149 339 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car02g00149 339 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Car02g00149 339 Gene3D - 7 67 - -
Car02g00149 339 PANTHER F14D16.11-RELATED 1 334 - -
Car02g00149 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Car02g00149 339 SMART sant 66 114 IPR001005 -
Car02g00149 339 SMART sant 13 63 IPR001005 -
Car02g00149 339 Gene3D - 68 131 - -
Car02g00149 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Car02g00149 339 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Car02g00149 339 PANTHER F14D16.11-RELATED 1 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00149 Car-Chr2 1437853 1440408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00149 1 339 MYB Transcription Factor Family AT3G28470 47.911 4.75e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car02g00149 Myb_DNA-binding 7.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00149 K09422 - gmx:100815077 395.971