Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00139 ATGAAGAGGGTAAGAGATGATATTTACTCCGCCTCTGCTTCTCAATTCAAACGCCCTTTTGGTTCTTCACGTGCTGATTCCGGCTATGGCCAACCCCAAGTCCCTggaggtggaggtggcggaggtggagttgttattggtggaggaggaggaggcggtggaggagAAACTCCTTCCCAGAAACTCACTACCAATGATGCCTTATCCTATTTGAAGGAAGTGAAAGACATGTTTCAAGATCAAAAAGAAAAATATGATAGTTTCCTTGAGGTTATGAAAGATTTCAAGGCTCAAAGGACTGACACTGTTGGTGTCATAGCAAGGGTCAAGGAACTATTCAAAGGGCACAACAATTTGATTTTTGGATTTAACACTTTCTTGCCAAAGGGATATGAGATAACACTTGATGAGGAAGAAGCTCCTCCGAAGAAAACGGTTGAATTCGTAGAAGCTATTAGTTTTGTGAACAAGATAAAGCATCGATTCCAAAGTGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTATCGCAAAGAGCACAAGGATATTGGTGAGGTTTACAGTGAGGTTGCTACCCTTTTTAAGGACCATGAAGATTTGCTTGATGAGTTCACTAGATTCTTACCAGATAATTCTGCAGCACCTTCCACACAGCATGCTCCATTCAGTCGAAATTCAATGCAGCGCTTTAATGAGCGGAGCTCCATGGCACCTATGATGCGGCAAATGCAAGTAGAAAAGCAACGATATCGGCGAGACCGGTTTCCTTCTCATGATCGTGATCTGAGTGTTGAACGCCCTGATCTGGATGACGACAAAACGATGATGAACATGCACAAGGAGCAGAGGAAACGTGAAATCAGGGATAGAAGAATTCGTGATCATGCTGAGAGAGACCCTGATCTTGATAACAGCAGGGATTTGAACTCACAACGCTTTCCTGACAAAAAGAAATCTGTTAAGAAGTCCGAAGGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGCGCTGACGACTACCAAACATTCTTGAAGTGCCTTCACATTTTTAGCAATGGAATAATAAAAAGGAACGATTTACAAAATTTGGTGACCGATTTACTTGGGAAGTATTCTGATCTCATGAGTGAATTCAATGATTTCTTAGAGCGTTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGCCACTATCTACTGATGGTCATTCATCAAGATCATCCAAGTTGGAGGACAAAGACAAAGAACTGAAGCGTGAGATGGATGGAGCTAAAGAGAAAGAAAGATACAAAGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGCAAACGTTGTTCTCCAAGCTACCGGCTTCTACCTTCTGATTATCCAATTCCTATGGCTAGCCAGCGATCTGATCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGACTTCGGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAATACGAAGAAAGCTTGTTCAGATGTGAAGATGACAGGTTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCCGCTGCTAAACGGGCTGAGGAGTTGTACAACAACATTACTGAAAATAAGATCAATTTGGAGAGTCTGAATCGTATTGAAGATCACTTCACCGTTCTAAATCTAAGATGCATTGAACGCCTATACGGTGACCATGGTCTTGATGCTCTTGACATACTGCGTAAGAACCCCACTCATGCTCTGCCTGTAATATTGACTCGATTGAAGCAGAAACAAGAGGAGTGGAGTCGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATTTATGCTAAGAATCACTACAAATCACTTGATCATCGTAGCTTCTATTTCAAGCAACAAGATTCTAAGAACTTGAGCACAAAATCTTTGGTGGCTGAGATTAAAGAAATTAAAGAGAAGCAGCAGAAAGAGGATGACATCATTCAGTCTATTGCTGCTGGAACTAAACATCCTCTCATTCCACATTTGGAATTTGACTATTCTGATGCTGAAGTTCACGAGGACCTGTATAAACTTGTTCGCTATTCATGTGAGGAAGTATTCTCAAGTAAAGAGTTATTCAATAAAATTATGAGGCTCTGGAGTACCTTCTTGGAACCAATGCTTGGTATTACTTCCCAATCGTATGCGGCAGAAAGGGTAGAGGACAGGAAAGCAGGACAGAATGGTCGAAATTCTGCTGCACCAAATGTAGTAGCCGATGGAAGCCCTCACAAAGACTCAATTTCGATGAATTCAAGGTTACCGAAATCTGAGAAGAATGATGTTGATGGTAGAGTAACTGAAGTGAAAAATGTTCACAAAACTAGTGTTGTGGCCAATGATAAAGAAAATGGCTCTGTTGGTGGCGAACTTGTTTGTAGAGATGACCTTTTAATGGATAATAAAGGGCAGAAAAGTGTCGACTGCAGTGATAAAGCTCCTGGATTTGGTAAACAGTTTTCGTCCGATGAACAAGGAGCGAGGAACAGTGCATCTGTTGCAATTAAAGGAGAAAACAGTATGAACAAAATCAACATAGATATGTCTCCAGGCCGCGTACTTACTCCATCCCGACCTACCGAAGCTGATGTCTCTGTAGCCATGGTCAAGTCTCCAAGTGTTAATGTCTCTGTAGCCATGGCCAAGTCTCCAAGTGTTAATGTACCTTTGGTGGAGGGATGTGACATTACTGCTCCGGTACCAGTGGCCAATGGCGTGTTAGTTGAGACCAGTAAAGTTAAAAGCCATGAAGAATCTTCTGTTCCTTGCAAAATTGAAAAAGAAGAGGGTGAATTATCTCCAACTGCCGACTCTGAGGAGGATAATTTTGTTGCTTATGGAGATTCAAATGCGCAATCAAAGAACGATGCTGATAGAAGGAAATATCAGTCTAGAAATGGAGAGGACGAATGCCGTCCAGAGGCTGGAGGTGATAATGATGCCGATGCTGATGATGAAGACAGCGAAAATGTTTCTGAAGCTGGTGAAGATGTGTCTGGAAGTGAGTCTGCTGGTGATGAATGCTTCCGGGGAGATCATGAGGAGGAGGAAGATATAGAACACGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGTACGTTGTGTGATGCACAAACTGGAGGAGATGGTTCGTCTTTACCTTTATCAGAGAGGTTCCTTTCAACTGTGAAACCTCTCACAAAGCATGTTTCAGCAGTTTCATTTGTTGAAGATGTGAAGGACTCAAGGGTGTTTTACGGGAATGATGATTTCTTTGCGCTTTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCTGCGAAAGAAAATTCAACGGGTACCGAATTGAAATGGAAAGCAAAAGATGCTAGTTCCCCAGATCTTTATTCAAGATTTATGAATGCACTGTACAACTTGCTTGATGGATCTGCCGAGAATGCTAAGTTTGAAGATGAATGTCGGGCAATTCTCGGGAATCAATCTTATGTGTTATTCACTTTGGACAAGTTAATATATAAACTAATCAGACAGCTTCAAACTGTTGCAACCGACGAGGAAGACAATAAGCTTCTCCAATTATACGAGTACGAAAAGTCTCGGAAACCTGGGAAATTAAATGATTCTGTATATCATGCAAATGCACATGTCATCCTTCATGAGGAGAACGTATATCGGTTTCAATGTTCCTCTAGCCCCTCTCGGCTCTCGATCCAGCTCATGGACAATATGAACGAAAAACCCGAGTTTTCTGCTGTTTCTGTTGATCCAAATTTTTCTTTTTATCTGCACAATGATTTTCTGTCTGTCCTTCCTGTCAAAAAGGAGCCTCATGGCATTTTACTGGAAAGAAACAAACCCAAATATGGGGACTTAGATGAGCTTTCTGCAATTTGTGCTGTCATGGAAGATGTCAAAGTAATTAATGGATTGGAATGCAAGATAGCTTGCAACTCTTCCAAGATTTCTTATGTTCTTGACACACAAGATTTTTTCTTCCGTCCAAGAAGGAAAAGACAAAGACGAACATCATCTAGTATGACATCTTCTCGGTCTCGCAAGGAGAGAGAGGAAAGATTCCGCAAATTGTTGGCGTCCTCTTAA 4170 0.405 MKRVRDDIYSASASQFKRPFGSSRADSGYGQPQVPGGGGGGGGVVIGGGGGGGGGETPSQKLTTNDALSYLKEVKDMFQDQKEKYDSFLEVMKDFKAQRTDTVGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEEEAPPKKTVEFVEAISFVNKIKHRFQSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHEDLLDEFTRFLPDNSAAPSTQHAPFSRNSMQRFNERSSMAPMMRQMQVEKQRYRRDRFPSHDRDLSVERPDLDDDKTMMNMHKEQRKREIRDRRIRDHAERDPDLDNSRDLNSQRFPDKKKSVKKSEGMYSQAFSFCEKVKEKLSSADDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKYSDLMSEFNDFLERCENIDGFLAGVMSKKPLSTDGHSSRSSKLEDKDKELKREMDGAKEKERYKEKYMGKSIQELDLSDCKRCSPSYRLLPSDYPIPMASQRSDLGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNITENKINLESLNRIEDHFTVLNLRCIERLYGDHGLDALDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDIIQSIAAGTKHPLIPHLEFDYSDAEVHEDLYKLVRYSCEEVFSSKELFNKIMRLWSTFLEPMLGITSQSYAAERVEDRKAGQNGRNSAAPNVVADGSPHKDSISMNSRLPKSEKNDVDGRVTEVKNVHKTSVVANDKENGSVGGELVCRDDLLMDNKGQKSVDCSDKAPGFGKQFSSDEQGARNSASVAIKGENSMNKINIDMSPGRVLTPSRPTEADVSVAMVKSPSVNVSVAMAKSPSVNVPLVEGCDITAPVPVANGVLVETSKVKSHEESSVPCKIEKEEGELSPTADSEEDNFVAYGDSNAQSKNDADRRKYQSRNGEDECRPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFRGDHEEEEDIEHDDVDGKAESEGEAEGTLCDAQTGGDGSSLPLSERFLSTVKPLTKHVSAVSFVEDVKDSRVFYGNDDFFALFRLHQILYERILSAKENSTGTELKWKAKDASSPDLYSRFMNALYNLLDGSAENAKFEDECRAILGNQSYVLFTLDKLIYKLIRQLQTVATDEEDNKLLQLYEYEKSRKPGKLNDSVYHANAHVILHEENVYRFQCSSSPSRLSIQLMDNMNEKPEFSAVSVDPNFSFYLHNDFLSVLPVKKEPHGILLERNKPKYGDLDELSAICAVMEDVKVINGLECKIACNSSKISYVLDTQDFFFRPRRKRQRRTSSSMTSSRSRKEREERFRKLLASS 1389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00139 1389 Gene3D Paired amphipathic helix 143 215 IPR036600 GO:0006355
Car02g00139 1389 MobiDBLite consensus disorder prediction 410 438 - -
Car02g00139 1389 MobiDBLite consensus disorder prediction 248 324 - -
Car02g00139 1389 MobiDBLite consensus disorder prediction 1359 1389 - -
Car02g00139 1389 Pfam Sin3 family co-repressor 461 553 IPR013194 -
Car02g00139 1389 SUPERFAMILY PAH2 domain 57 129 IPR036600 GO:0006355
Car02g00139 1389 PANTHER SIN3B-RELATED 1 794 IPR039774 GO:0003714
Car02g00139 1389 PANTHER SIN3B-RELATED 889 1372 IPR039774 GO:0003714
Car02g00139 1389 MobiDBLite consensus disorder prediction 15 29 - -
Car02g00139 1389 Gene3D Paired amphipathic helix 66 128 IPR036600 GO:0006355
Car02g00139 1389 MobiDBLite consensus disorder prediction 1004 1018 - -
Car02g00139 1389 Gene3D Paired amphipathic helix 325 397 IPR036600 GO:0006355
Car02g00139 1389 MobiDBLite consensus disorder prediction 1370 1389 - -
Car02g00139 1389 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 889 1372 - -
Car02g00139 1389 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 794 - -
Car02g00139 1389 Coils Coil 420 440 - -
Car02g00139 1389 SMART hdac_interact2seq4b 459 560 IPR013194 -
Car02g00139 1389 ProSiteProfiles PAH domain profile. 60 130 IPR003822 GO:0006355
Car02g00139 1389 SUPERFAMILY PAH2 domain 141 213 IPR036600 GO:0006355
Car02g00139 1389 MobiDBLite consensus disorder prediction 418 438 - -
Car02g00139 1389 ProSiteProfiles PAH domain profile. 144 214 IPR003822 GO:0006355
Car02g00139 1389 MobiDBLite consensus disorder prediction 746 810 - -
Car02g00139 1389 Pfam Paired amphipathic helix repeat 348 392 IPR003822 GO:0006355
Car02g00139 1389 Pfam Paired amphipathic helix repeat 167 211 IPR003822 GO:0006355
Car02g00139 1389 Pfam Paired amphipathic helix repeat 83 127 IPR003822 GO:0006355
Car02g00139 1389 MobiDBLite consensus disorder prediction 781 795 - -
Car02g00139 1389 Coils Coil 532 559 - -
Car02g00139 1389 MobiDBLite consensus disorder prediction 234 324 - -
Car02g00139 1389 MobiDBLite consensus disorder prediction 937 957 - -
Car02g00139 1389 Pfam C-terminal domain of Sin3a protein 1107 1354 IPR031693 -
Car02g00139 1389 SUPERFAMILY PAH2 domain 329 395 IPR036600 GO:0006355
Car02g00139 1389 MobiDBLite consensus disorder prediction 978 1003 - -
Car02g00139 1389 ProSiteProfiles PAH domain profile. 319 395 IPR003822 GO:0006355
Car02g00139 1389 MobiDBLite consensus disorder prediction 15 62 - -
Car02g00139 1389 MobiDBLite consensus disorder prediction 937 1072 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00139 Car-Chr2 1325410 1337054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00139 44 151 WRKY Transcription Factor Family AT4G12020 52.778 4.02e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car02g00139 Sin3a_C 4.8e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00139 K11644 - gmx:100812405 2192.54