Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00125 ATGATGATATTCTTCAACACAACAAAAACCCAAAACCCACCTCAAGAATTTCTATGCCCCATTTCCGGTTCTCTAATGTCCGACCCTGTAATTGTCTCCTCTGGCCATTCCTTCGACCGAACCTCCATCCAAGCCTGTCAAAATCTCAACTTTACCCCTCAACTTTCTGATGGCACCACccccaatttcacaaccctaatccctaatctaaatctcaaatcctcaattttcaaatggacccaagcccaagcccaaacccaaacccaattccaaaccaacccaaacTTAACCACTACCGAAAATCTCGTACGCAAATTAATTTCAATAAAACATCAACAAAACCAAAACAACGTCGTTTTAGAGAAACACGACAAAGAAAAAACACGACCAATCTCAATCTCAATTACATCACCACGAAAAACCTCGTACTCAAGTTCAAATGAATCCATTGCAACTGCCACGTCATCATCATCAACAACAACGCCACCACTTCAAAGTTTTTCTTACTCTTCACCTTCTTCCTCCGAAATCGAACCTTCCACAACACCAGAAGAAGAAGAAATCGTAACCAAACTAAGAAACTCTCAAAGTTTCATAATTGAAGAAGCTTTAATCTCTCTAAGAAAAATCACGAGAACGAAAGTTGAAACTAGAGTTCAACTTTGCACCAATAGGATACTCTCCTTTCTTCGTACTCTAATTTCGTCCAAAGACGAAATTATAAAAGTCAACGCTCTTGCTTCATTGGTCAATTTATCGCTTGAGAAAGTCAACAAGGTGAAGATCGTACGGTCAGGATTTGTTCCACCGTTGATCGATGTTTTAAAATTTGGATCCTCTGAATCGCGGGAACACGCTTGTTGTGTGTTCTTTAGTTTAGCGCTTGATGATGATAATAAAACTGCGATTGGTGTTTTAGGTGCACTTTCGCCTTTGCTTCACGCGCTTAAATGTGAGAGTGAGAGGACGCGGCATGATTCAGCTTTGGCGCTTTATCATTTGTCTTTAGTGAGGAGTAATAGGGTTAAGATGGTTAAACTTGGGTTTGTTTCGGTTCTTTTTGGAATGGTTAAGTCGGGTCAAATTGACCCGATTTTGTTGATTTTGGGTAATTTAGGTTTTGGGTCGGATGGTCGGGCTGCAATGTTGGATGCGGGTGTTGTGGAGTATTTGGTGGGATTGTTGGGTGGGACCGAGTTGGAATCCGAGTTGACTCGAGAGAGTTGTGTTGGGGTTTTGTATGCACTGAGTTACGGCGGGTTGAGGTTTAAAGCGGTGGCGAAGGAGGTTAGATTGGTGGAAGTGTTGCAAAAGATGGAGAAAATGAAGAGTGAGAGTGGTAATGAGAAAGTTAGGAGGATATTGGAGATGATGGAAGCGAAGGAGGTGGAAGAAGATGAGGTGGATTGGGAGGAGTTGCTCGACTCAGGGTTCACTCGTCGAGTTAGTAGTGGGTTGGATGAGTCAACTGCTAACTCGACCGAGTTATGA 1491 0.3937 MMIFFNTTKTQNPPQEFLCPISGSLMSDPVIVSSGHSFDRTSIQACQNLNFTPQLSDGTTPNFTTLIPNLNLKSSIFKWTQAQAQTQTQFQTNPNLTTTENLVRKLISIKHQQNQNNVVLEKHDKEKTRPISISITSPRKTSYSSSNESIATATSSSSTTTPPLQSFSYSSPSSSEIEPSTTPEEEEIVTKLRNSQSFIIEEALISLRKITRTKVETRVQLCTNRILSFLRTLISSKDEIIKVNALASLVNLSLEKVNKVKIVRSGFVPPLIDVLKFGSSESREHACCVFFSLALDDDNKTAIGVLGALSPLLHALKCESERTRHDSALALYHLSLVRSNRVKMVKLGFVSVLFGMVKSGQIDPILLILGNLGFGSDGRAAMLDAGVVEYLVGLLGGTELESELTRESCVGVLYALSYGGLRFKAVAKEVRLVEVLQKMEKMKSESGNEKVRRILEMMEAKEVEEDEVDWEELLDSGFTRRVSSGLDESTANSTEL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00125 496 SUPERFAMILY ARM repeat 188 446 IPR016024 -
Car02g00125 496 SMART Ubox_2 16 79 IPR003613 GO:0004842|GO:0016567
Car02g00125 496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 118 IPR013083 -
Car02g00125 496 MobiDBLite consensus disorder prediction 131 179 - -
Car02g00125 496 ProSiteProfiles U-box domain profile. 12 86 IPR003613 GO:0004842|GO:0016567
Car02g00125 496 PANTHER U BOX DOMAIN-CONTAINING 8 481 - -
Car02g00125 496 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 8 481 - -
Car02g00125 496 Pfam U-box domain 14 83 IPR003613 GO:0004842|GO:0016567
Car02g00125 496 MobiDBLite consensus disorder prediction 117 187 - -
Car02g00125 496 Pfam Armadillo/beta-catenin-like repeat 296 335 IPR000225 GO:0005515
Car02g00125 496 Gene3D - 182 459 IPR011989 -
Car02g00125 496 SUPERFAMILY RING/U-box 11 83 - -
Car02g00125 496 SMART arm_5 296 336 IPR000225 GO:0005515
Car02g00125 496 SMART arm_5 375 418 IPR000225 GO:0005515
Car02g00125 496 SMART arm_5 255 295 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00125 Car-Chr2 1205455 1207298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00125 8 496 U-box Gene Family AT5G40140 49.608 3.14e-140 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00125 - - lja:Lj2g3v1020040.1 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00125 02 1205455 1207298 Car03g00080 03 1808341 1814485 PCT