Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00108 ATGTCAGAAACTATGTATCCTAAATTGTTATTTGAACATACCCATTTGAGAATGGCTTTGATTAATCATCAAATCCATCAAAAAGATGCAAACTTTATGAATTATCCACCACCAACACTACCATTATCACCACAAGTTTTGTCTTCATCTTCATCAAGTTCTTcaacaacaacaacaacaacaacaTCTTCATCTTCTAGTACTAGAATTAGTCCTGCTGTTCTTTTCATCATAGTAGTTCTTGCAGTTCTTTTTTTCATATCTGGTTTACTTCACTTGCTTGTTAGATTTCTCATAAAGAATCCATCTTCTTCAGCTTCTAATCAATCTAATAGACACCCTAATGAAATTTCAACTTCTGATGCACTTCAAAGACAGCTTCAACAGCTTTTCCATCTTCATGATTCTGGTTTGGATCAAGCTTTTATTGATGCACTTCCTGTTTTTCATTTTAAGGAGATTGTTGGTTTGAAAAAAGACCCTTTTGATTGTGCTGTTTGTTTGTGTGAATTTTCTGAGAAAGATAAGCTTAGATTGTTACCTATGTGTAGTCATGCTTTTCATATTAGTTGTATAGATACTTGGCTACTTTCAAACTCAACATGTCCTCTTTGTAGAGGAACACTTCACACTCCTGGATTTTCTATTGAAAATCCAATTTTCGATTTCGATGATATGAGGGAAGATGATGGTTGTCCTTGTAATGGAGAAAGTGGATTTGTTAATAGACAAAAAGAAATTGTTGTTGAAGAAGTTGTAGATAAAGGGGTTTTTCCTGTTCGACTCGGTAAATTCAAGAAGATGAATGCGGAAGCTGGTAGAGAGAACGAAGAAGTAGGTGAAACGAGTAGTAGTAATTTGGATGCTAGAAGATGTTTTTCGATGGGAAGTTACCAATACGAGGTCGGAAATTCGGATTTAAGGGTTGCTTTAAACCATGAAAGTAAAAATCTTCATCATCATCATGATGCAAGGCTTAACAAAGGAATAGGAAATGGTGAGAGTATTTGTGTGGAGGATGATTTGGAAGCAAAGAAGATTAGTAATGTTAGTAAAGGTGAAAGTTTTTCGATTTCGAAGATTTGGTTGTGGCCAAGGAAAGGAAAGTTTTCTTCTTCTAGTTCTTTAGAAGCTCATCATAATGGCATGCCATTGCCATCTTATCTTAACAAAGATTTGCATCATCATGGGATGAGGGAAACAGATGGTGTATGA 1215 0.344 MSETMYPKLLFEHTHLRMALINHQIHQKDANFMNYPPPTLPLSPQVLSSSSSSSSTTTTTTTSSSSSTRISPAVLFIIVVLAVLFFISGLLHLLVRFLIKNPSSSASNQSNRHPNEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFHFKEIVGLKKDPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLHTPGFSIENPIFDFDDMREDDGCPCNGESGFVNRQKEIVVEEVVDKGVFPVRLGKFKKMNAEAGRENEEVGETSSSNLDARRCFSMGSYQYEVGNSDLRVALNHESKNLHHHHDARLNKGIGNGESICVEDDLEAKKISNVSKGESFSISKIWLWPRKGKFSSSSSLEAHHNGMPLPSYLNKDLHHHGMRETDGV 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00108 404 PANTHER RING-H2 FINGER PROTEIN ATL47-RELATED 45 375 - -
Car02g00108 404 MobiDBLite consensus disorder prediction 43 66 - -
Car02g00108 404 SMART ring_2 164 205 IPR001841 -
Car02g00108 404 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 45 375 - -
Car02g00108 404 MobiDBLite consensus disorder prediction 44 66 - -
Car02g00108 404 SUPERFAMILY RING/U-box 142 212 - -
Car02g00108 404 CDD RING-H2_PA-TM-RING 163 206 - -
Car02g00108 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 212 IPR013083 -
Car02g00108 404 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
Car02g00108 404 Pfam Ring finger domain 163 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00108 Car-Chr2 1032725 1035630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00108 59 375 C3H Transcription Factor Family AT2G18650 40.407 3.17e-58 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00108 - - gmx:100787206 499.204