Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00099 ATGGAGTCTGGTCGTCTTTATTTTGATACTACTTCTGTTTGTCGTGGGAACAACAGCATGAATATGTTGTACCTTGGGAATGCTGATCTCAGTTTTCGAGGaagatcaatgatgagcatggaagaaggctcaaagaggagacctttctttagctcgccagatgaactgtatgatgaggagtattatgaggagcagtcgccggagaagaagcGCCGTCTCACTTCCGAGCAGGTACATCTGTTGGAGAAGAGCTTTGAGGAAGAGAACAAATTGGAGCCAGAGAGAAAGACCCAATTGGCCAAGAAGCTAGGGTTGCAACCTAGGCAGGTGGCAGTTTGGTTTCAGAACCGTAGGGCTAGGTGGAAGACCAAACAACTTGAAAGAGACTATGATGTTCTTAAGTCTTCCTATGATTCCCTACTTTCAACATATGATTCCATTGTTAAGGAGAATGAGAAACTCAAATCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGAGATGCTAGGAGAACCTTTGTTAGACAAGGAAGCTAATCCACTACCGATCGAAATAGCACAAATTTTCAGCATCAAGGTGGATGACCACATGAGTGCTGGAAGTGTTGGAAGTGCAGTGGTGGACGAGGGTAGTCCCCATGTCGTTGTTGACAGTGTTGATTCTTACTTTCCAGCTGACAACTATGGTGGATGTGTGGCTCCAATTGAAAGAGTTCAATCAGAGGAGGATGATGGGAGTGATGATGGGAGAAGTTACTTTAATGTGTTTGTTGCATCTGAAACTGAGCAGCAAAACCATGGAGAGGGGGAGGCATTGAATTGGTGGGGAAATATGTATTATGTTGCATAA 861 0.381 MESGRLYFDTTSVCRGNNSMNMLYLGNADLSFRGRSMMSMEEGSKRRPFFSSPDELYDEEYYEEQSPEKKRRLTSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSIVKENEKLKSEVVSLNEKLQVQAKEMLGEPLLDKEANPLPIEIAQIFSIKVDDHMSAGSVGSAVVDEGSPHVVVDSVDSYFPADNYGGCVAPIERVQSEEDDGSDDGRSYFNVFVASETEQQNHGEGEALNWWGNMYYVA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00099 286 Gene3D - 62 137 - -
Car02g00099 286 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677
Car02g00099 286 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677
Car02g00099 286 SMART HOX_1 67 128 IPR001356 GO:0003677
Car02g00099 286 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Car02g00099 286 SUPERFAMILY Homeodomain-like 58 126 IPR009057 -
Car02g00099 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 259 - -
Car02g00099 286 Coils Coil 144 171 - -
Car02g00099 286 CDD homeodomain 69 125 IPR001356 GO:0003677
Car02g00099 286 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Car02g00099 286 Pfam Homeobox associated leucine zipper 124 166 IPR003106 GO:0006355|GO:0043565
Car02g00099 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 259 IPR045224 GO:0003700
Car02g00099 286 Pfam Homeodomain 69 122 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00099 Car-Chr2 947536 951115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00099 1 280 Homeobox Transcription Factor Family AT3G01470 56.993 4.66e-95 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car02g00099 Homeodomain 4.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00099 K09338 - gmx:100797836 444.506