Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00086 ATGCAGGGTGTTTGTGTTGATGGTGGTGGAAAGGATTCCTCCATTTATGAGCAAACAAGAGTACAAAATGCTGGGTTCTCGGCCCCAACTCCAATTCAGGCACAATCCTGGCCCATTGCTCTTCAAAGTAAAGATATAGTTGCCATTGCTAAAACAGGTTCAGGGAAAACCTTGGGGTATTTACTTCCAGCATTTATTCACCTCAAGCGCACTAATAATAACTCCAAAATGTGCCCCACTGTATTGGTACTTTCACCAACAAGGGAATTGGCAACTCAGATTCAAGATGAAGCTGTGAAGTTTAGTAAAACATCAAGAATTTCCTGCACAGTTTTGCTAAACGTAGGTAATTTGGTAGTGGAATATATTAGCTCTTGTAGTATTGGACTTATGCATGATGTGGGACACGGGCCATTCAGTCACTTGTTTGAACGCGAGTTTCTTCCCCAAGTTATGAGCGGTTCTGATTGGTCGCATGAACAAATGTCTGTCAATATGGTTGATCATATAGTTGAGGAACACCGTATTGATATTGATCCTCAGATGTTAAAAAGAGTCAAGGAGATGATATTGGCGAGCTCCGAATTTGCTCTTCCTAGGAGCTCAAGTGAGAAGAGTTTCCTGTATGATATTGTTGCAAATGGACGAAATGGAATCGATGTTGACAAATTTGACTATATTGCTCGTGACTGTCGAGCTTGTGGTGTTGGATGCAACTTTGAATTTCAGAGGTTATTGGAGACCATGCGGGTTTTAGATGACAAGATTTGTTATCGTGCAAAGGATTATCTTACCATCCACAAGTTGTTTGCAACTCGTGCTGATCTGTATAGAACAGTTTATACACATCCAAAAGTAAAGGCAATAGAGCTTATGGTGGTTGATGCACTTGTGCAAGCAAATGATTATTTGCAGATTTCATCTAGCATTCAAGATCCTGGTGAATATTGGAAGCTGGATGATTCTATAATTAAAACCATTGAGATTTCTCATGCGTCCGAACTGAAGGAGGCTAGAGAGTTGATCCTGCGCATTCGAAGGCGGAACCTGTATCAGTTCTGTAATGAGTATGCTGTTCCAAGGGATATAATGGATAATTTTAAGAAAGTCACTCCAAAGGATATAGTTTGTTCACAGAAAAATGGTGGGGTTATGTTGAAAGAGGAGGATGTAGCTGTTTGCAACACCAAAATCGATTTGACTCGCGGAAAGGATAATCCTCTTGAAAGATTTGACTATAATGCTCGTGACTGTCGAGCTAGTGGTGTTGGATGCAACTTTGAATTTCAGAGGTTATTGGAGACCATGCGCGTTTTGGATGACGAGATTTGTTATTGTGCAAACGACTATCTTACCATCCACAAGTTGTTTGCAATTCATGCTGTTCTGTATAGAACAATTTATACACATCCAAAAGTAAAGGCAATAGAGCTTATGGTGGTTGATGCATTTGTGCAAGCAAATGATTATTTGCAGATTTCATCCAGCATTCAAGATCTTGGTGAATATTGGAAGCTGGACGAATTGAGGGTTATGATTCATTCTGGAAAGCAAGCAATAGAGCGTACGGTGGTTGATGCATTTGTGCAAGCAAATGATTATTTGCAGATTTCATCCAGCATTCAAGATCTTGGTGAATATGAGAAGCTGGATGAATTGAGGGTTATGATTCATTCTGGAAAGCAAGTAAGCTCTTCGTTAAAACTGAAATCAAGGGTTTCAAGACTcatcttcaagagcagctttgattgttgtgagcaagcTAGCAAGACTGTTAAATTGTTGATCGAATCCGAGAAATCGGCCAAACTCCTTTTGAAGCTCAAATGTTTGAAGGACAGTTTCAAAGCGCAGCTTGAATCATTTTCTAATTATTGGGAATGA 1884 0.3901 MQGVCVDGGGKDSSIYEQTRVQNAGFSAPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPAFIHLKRTNNNSKMCPTVLVLSPTRELATQIQDEAVKFSKTSRISCTVLLNVGNLVVEYISSCSIGLMHDVGHGPFSHLFEREFLPQVMSGSDWSHEQMSVNMVDHIVEEHRIDIDPQMLKRVKEMILASSEFALPRSSSEKSFLYDIVANGRNGIDVDKFDYIARDCRACGVGCNFEFQRLLETMRVLDDKICYRAKDYLTIHKLFATRADLYRTVYTHPKVKAIELMVVDALVQANDYLQISSSIQDPGEYWKLDDSIIKTIEISHASELKEARELILRIRRRNLYQFCNEYAVPRDIMDNFKKVTPKDIVCSQKNGGVMLKEEDVAVCNTKIDLTRGKDNPLERFDYNARDCRASGVGCNFEFQRLLETMRVLDDEICYCANDYLTIHKLFAIHAVLYRTIYTHPKVKAIELMVVDAFVQANDYLQISSSIQDLGEYWKLDELRVMIHSGKQAIERTVVDAFVQANDYLQISSSIQDLGEYEKLDELRVMIHSGKQVSSSLKLKSRVSRLIFKSSFDCCEQASKTVKLLIESEKSAKLLLKLKCLKDSFKAQLESFSNYWE 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00086 627 PANTHER METAL-DEPENDENT PHOSPHOHYDROLASE 128 410 - -
Car02g00086 627 CDD DEADc 21 112 - -
Car02g00086 627 PANTHER DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE 511 568 - -
Car02g00086 627 Pfam DEAD/DEAH box helicase 30 110 IPR011545 GO:0003676|GO:0005524
Car02g00086 627 PANTHER DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE 410 508 - -
Car02g00086 627 Gene3D Hypothetical protein af1432 122 324 - -
Car02g00086 627 Pfam HD domain 128 230 IPR006674 -
Car02g00086 627 PANTHER METAL-DEPENDENT PHOSPHOHYDROLASE 511 568 - -
Car02g00086 627 SMART ultradead3 25 212 IPR014001 -
Car02g00086 627 SUPERFAMILY HD-domain/PDEase-like 408 532 - -
Car02g00086 627 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 37 103 IPR014001 -
Car02g00086 627 PANTHER DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE 128 410 - -
Car02g00086 627 SUPERFAMILY HD-domain/PDEase-like 128 363 - -
Car02g00086 627 Pfam HD associated region 242 352 IPR045509 -
Car02g00086 627 Gene3D Hypothetical protein af1432 397 511 - -
Car02g00086 627 PANTHER METAL-DEPENDENT PHOSPHOHYDROLASE 410 508 - -
Car02g00086 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 113 IPR027417 -
Car02g00086 627 Gene3D - 14 121 IPR027417 -
Car02g00086 627 CDD HDc 129 236 IPR003607 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00086 Car-Chr2 815481 829346 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00086 21 102 Eukaryotic Initiation Factors Gene Family AT5G11200 34.146 8.97e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00086 K22544 - gmx:100803621 479.944