Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00064 ATGGACAAAAAACCGTGCAATTCATCTCAAGATCCTGAAGTTAGAAAGGGGCCATGGACCATGGAAGAAGATTTGATTTTGATCAATTATATTGCAAATCATGGTGAAGGTGTATGGAATTCCTTAGCCAAAGCTGCTGGTCTTAAACGTACAGGAAAGAGTTGTAGACTTCGATGGCTAAACTACCTTCGTCCTGATGTTAGACGAGGAAATATTACACCTGAGGAACAACTTTTGATCATGGAACTTCATGAAAAATGGGGAAACAGGTGGTCCAAAATTGCAAAGCATCTTCCAGGAAGAACTGACAATGAAATTAAGAATTTTTGGAGGACTAGGATACAAAAACACATTAAGCAAGTTGATCATAATCAACAAAATTCCCAACAACAAAAGAGTTCATCAAGTGATCATCATCAAACAAACACTAGCCAAGCTTCAAATTCTACAATGGTAGAGCCAATGGAAAATTATTCTCCAACTTCATACCAAGCAACAAATTTAGAGCCATTTCCAACTCAATTTCCAACAATCAATGATCACAACTCAAGTTGTTGTACCAATGACCACAACACCAACAACTATTGGAGCATGGAGGACATTTGGTCAATGCAATTACTCAATGGAGATTAA 633 0.3744 MDKKPCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHEKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQVDHNQQNSQQQKSSSSDHHQTNTSQASNSTMVEPMENYSPTSYQATNLEPFPTQFPTINDHNSSCCTNDHNTNNYWSMEDIWSMQLLNGD 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00064 210 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 207 - -
Car02g00064 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Car02g00064 210 MobiDBLite consensus disorder prediction 120 168 - -
Car02g00064 210 Gene3D - 73 147 - -
Car02g00064 210 Gene3D - 16 68 - -
Car02g00064 210 MobiDBLite consensus disorder prediction 121 168 - -
Car02g00064 210 CDD SANT 73 112 IPR001005 -
Car02g00064 210 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 207 IPR044676 GO:0003700|GO:0006355|GO:0043565
Car02g00064 210 CDD SANT 18 63 IPR001005 -
Car02g00064 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Car02g00064 210 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Car02g00064 210 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Car02g00064 210 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Car02g00064 210 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Car02g00064 210 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Car02g00064 210 SMART sant 68 116 IPR001005 -
Car02g00064 210 SMART sant 15 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00064 Car-Chr2 590047 594858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00064 10 210 MYB Transcription Factor Family AT3G01530 57.214 4.64e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car02g00064 Myb_DNA-binding 7.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00064 K09422 - gmx:778048 336.265