Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00061 ATGGGTGATGTTTCTGGTGTGGGTAGTGACAATTTTGATTGGAACACTGATGATGAGCTTGAGATTGAGGGCTTTCATTCCTCATGTTTATCTGTACCCAATGGAGAGACTATTGCTGGGTCTGTAGGGGCAAGCTCATCTGCAGGTCCATCTAATACCAAGGTATTTGACCACTTTATTAGTATGGGATTTCCTGGAGAAATGGTTTCCAAAGTAATTCAGGAATATGGTGAGGAAAACGAAGATAAACTACTTGAAGAGCTTCTCACTTACTCAGCTCTAGAAAGTTCTCCTCAGCAACAACAGCAAGTTGAACCAGATCCCTGTTCTTCAGAGAATGCAGGGAGCTCGTGGGATGATTTATCATCCGATGATTCTTTTTCTGATGAAGAAATGCCAAAATCTGTTTCTAGGAATGGTGATCCATTACATACCCTGGTTAAAATGGGGTACAAGGAGGAGGAAGCTGTAATGGCCGTAGAAAGATTAGGTCCAAACGCCTCACTTGAGGACTTAGTTGATTTTATTGGTGTTGCTCAAATGGCAAAAGCAGAAGATGCCCTTCTGCCTCCTGAAGAAAAGCCACAATACAATGGGCATGCCAAACTAAAAAAAAGAAGTTTGTATGATTATGAAGTATTGGGCAAGAAAAAGCCAAAGATATTTGAGAAGAGAACACTGTGTGAGGAGGATGATGAGACACAGGCACTTCATCTGCCTAATCCGATGACTGGGTTTGGGGTTCCCACCGACCCAAATTCCATAATAACTCATAGACGAATTCCTGAAGATGCTATTGGGCCTCCTTACTTCTATTACGAGAATGTGGCGCTTGCACCAAAAGGTGTTTGGCAGACCATTTCTAGATTCCTGTACGATGTGGAGCCTGAGTATGTGGATTCCAAATATTTCTGTGCTGCAGCCAGGAAAAGGGGATATATTCACAATCTCCCCATTGAGAATAGATATCCTCTCCTACCTCTTCCACCACGCACAATACATGATGCATTTCCACTGTTGAAGAAGTGGTGGCCCTCATGGGATCCAAGGACCAAACTTAACTGTTTGCAAACGGTCACTGGAAGTGCAAAGCTGACAGAAAGAATAAGGAAAGCGGTGGAAAGCTGTGAAGAATTTGAAGATCCACCAGAAAGTGTAAAAAAGTATGTGCTTGATCAATGCCGGAAGTGGAACCTTGTTTGGGTGGGAAAGAACAAGGTTGCCCCCCTAGAGCCAGATGAAGTTGAAACATTGTTGGGCTTCCCAAGGAACCACACAAGGGGTGGTGGGATAAGTAGGACTGATAGATTCAAATCACTTGGCAATTCGTTCCAGGTTGACACAGTGGCATACCACCTATCTGTTCTGAAGGAAATGTATCCTAATGGGATCAATCTTCTATCTCTCTTTTCTGGAATTGGTGGTGCAGAGGTAGCTCTTCATCGTCTCGGTGTCCCTCTAAAGAATGTAGTGTCGGTCGAAAAATCAGAGGTGAACAGGAACATTGTCCGAAGTTGGTGGGAACAAACTAATCAAAGAGGTAATTTAGTTGATTTGGATGATGTGCAGCAACTAGATGCTGTTCGTTTGGAGCAGCTGATGAGTGCATTTGGGGGTTTTGATCTCATTGTTGGTGGAAGTCCATGTAATAACCTTGCTGGAAGCAACAGGAGAGAGAAAAACAAACTCAACAAAAAGAAAAACCGCGTAATCACTTTCCACTTCTCGCTCTTCAATCGGATTGTGTTAGTTTCTCTTGCCATGGCTGCTACAGCAACTGCTTCAGTGGGTCCACGGTATGCGCCAGCTGATCCGACACTTCCTAAACCATGGAAGGGTCTTGTGGATGGAAAGACTGGGTATCTTTACTTTTGGAATCCTGAGACTAATGTTACTCAGTACGAGAGGCCTTCAAGCACTGCTGCCCCACCTAAGTCTTCTGTCCAGGTTCAGCAATCGTCTCAAGGGCGTGCTCGCAGTCCTGATTTCAGTGATAGGTATGAGAGGAATGGAAATGGTGGGTCAAATGAGGGTGGATCCCGGAACAATCAGAGCTCCAAAGCTGACAGTTTTAGTTCTCATAATGATGCAAATGGGTCACATGTTGCTGGAAATGTTGGTTCTATCAGAGGTCATGTGGCATCAGATACAGGACCTGCATTATCTCCAGAGGCTTATAGACGTCGTCATGAGATCACTGTTACTGGAAATAATGTGCCTCCACCTGTTACATCATTTGGGTCTTCTGGCTTTCCGTCTGAGATTCTTAAAGAGGTACAAAATGCTGGGTTCTCGGCCCCAACTCCAATTCAGGCACAATCCTGGCCCATTGCTCTTCAAAGTAAAGATATAGTTGCCATTGCTAAAACAGGTTCAGGGAAAACCTTGGGGTATTTACTTCCAGCATTTATTCACCTCAAGCGCACTAATAATAACCCCAAAATGGGCCCCACTGTATTGGTACTTTCACCAACAAGGGAATTGGCAACTCAGATTCAAGATGAAGCTGTGAAGTTTAGTAAAACATCAAGAATTTCCTGCACATGTCTGTATGGAGGAGCACCAAAGGGTCCTCAATTGAGAGATCTTGACCGTGGAGTAGATATTGTGGTAGCCACTCCTGGTCGCTTGAATGATATTCTTGAGATGAGAAGAATCACTCTTCATCAGGTCTCTTACCTTGTGCTAGATGAGGCAGACAGAATGCTGGACATGGGTTTTGAACCTCAAATTAGGAAGATCGTGAATGAGGTGCCTGCTCGCAGGCAAACTCTCATGTTTACTGCAACATGGCCTAAGGAGGTTAAGAAAATTGCAGCTGATCTGCTGGTCAATCCTGTCCAGGTGAACATCGGCAATGTAGACGAGCTTGTTGCTAACAAGTCCATTACTCAGCATATTGAAGTTTTGCCACATATGGAGAAACAGCGACGGGTGGAAAATATTTTGCGGTCACAGGATCAAGGATCAAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCCCGTAATCTTTCACGCCAGTTTGGAGCTGCTGCTATTCATGGGGATAAATCCCAGGGTGAAAGGGATCACGTGTTGAATCAGTTTCGATCTGGGAAGACTCCTGTGCTTGTAGCCACAGATGTTGCAGCTCGAGGACTGGACATCAAAGACATTAGAGTGGTTGTCAACTACGACTTCCCTACAGGAGTGGAGGATTATGTTCATAGGATTGGAAGAACTGGGAGGGCTGGAGCCACTGGTATAGCTTACACCTTCTTTGGAGACCAGGATGCTAAACATGCTTCAGATCTTATCAAACTCTTGGAGGGTGCAAACCAGCGTGTCCCTCCAGAACTTCGTGAGATGTCATCCAGGGGTGGTGGGTTTGGCAGATCCAGACGATATGGTTCTGGTGGTCGTGGTGACTCTGGATTCGGTGCGAGGAGTTATGACTCTGGTGGGTATGGTGGAAGGGGTAATGATGCAGGATATGGTGGAAGAGGTGGATTTGGGACTGCTGCTTCTGGCAGAGGCGGAGGCCGTGGCTTTGACTATGACTCACAGAGGAACGAACGAGATCGAAGCCCCGACAGGGGATCTAGCTGGAGTGATCGCTTCAAAACCGTCAATCGTGAACGCAGCCGTAGTCACAGTCCTGTCAAAGCTGCACCATCACAAAACACCCAGGTCAGCTTTCACAAAGCAATGATGGAACGAAGTACAGGGGGTAGTGATCGCAACAAGAGCTTTAACCGGGAGCGAAGCCGCAGTCCTAGTCCTTACAAGGAGAAAAGAAGATTGCTGTCCTCCCCCGGCGGCGGTAGGTCTAACAATAGTCCTCAGAAAGGGTGGGGAGGATCTTCAGGTGATGGAAGAAATGGCAGTTCTCATGCTTACAATGGAGAAATGGAGGAAGGGATGATTCCTGATGAAGAAGGAATGATAGGTCATGATGACTCTATATATCAAAGTGTGGATTAG 3978 0.455 MGDVSGVGSDNFDWNTDDELEIEGFHSSCLSVPNGETIAGSVGASSSAGPSNTKVFDHFISMGFPGEMVSKVIQEYGEENEDKLLEELLTYSALESSPQQQQQVEPDPCSSENAGSSWDDLSSDDSFSDEEMPKSVSRNGDPLHTLVKMGYKEEEAVMAVERLGPNASLEDLVDFIGVAQMAKAEDALLPPEEKPQYNGHAKLKKRSLYDYEVLGKKKPKIFEKRTLCEEDDETQALHLPNPMTGFGVPTDPNSIITHRRIPEDAIGPPYFYYENVALAPKGVWQTISRFLYDVEPEYVDSKYFCAAARKRGYIHNLPIENRYPLLPLPPRTIHDAFPLLKKWWPSWDPRTKLNCLQTVTGSAKLTERIRKAVESCEEFEDPPESVKKYVLDQCRKWNLVWVGKNKVAPLEPDEVETLLGFPRNHTRGGGISRTDRFKSLGNSFQVDTVAYHLSVLKEMYPNGINLLSLFSGIGGAEVALHRLGVPLKNVVSVEKSEVNRNIVRSWWEQTNQRGNLVDLDDVQQLDAVRLEQLMSAFGGFDLIVGGSPCNNLAGSNRREKNKLNKKKNRVITFHFSLFNRIVLVSLAMAATATASVGPRYAPADPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPSSTAAPPKSSVQVQQSSQGRARSPDFSDRYERNGNGGSNEGGSRNNQSSKADSFSSHNDANGSHVAGNVGSIRGHVASDTGPALSPEAYRRRHEITVTGNNVPPPVTSFGSSGFPSEILKEVQNAGFSAPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPAFIHLKRTNNNPKMGPTVLVLSPTRELATQIQDEAVKFSKTSRISCTCLYGGAPKGPQLRDLDRGVDIVVATPGRLNDILEMRRITLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMFTATWPKEVKKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLPHMEKQRRVENILRSQDQGSKIIIFCSTKKMCDQLARNLSRQFGAAAIHGDKSQGERDHVLNQFRSGKTPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGIAYTFFGDQDAKHASDLIKLLEGANQRVPPELREMSSRGGGFGRSRRYGSGGRGDSGFGARSYDSGGYGGRGNDAGYGGRGGFGTAASGRGGGRGFDYDSQRNERDRSPDRGSSWSDRFKTVNRERSRSHSPVKAAPSQNTQVSFHKAMMERSTGGSDRNKSFNRERSRSPSPYKEKRRLLSSPGGGRSNNSPQKGWGGSSGDGRNGSSHAYNGEMEEGMIPDEEGMIGHDDSIYQSVD 1325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00061 1325 Gene3D Vaccinia Virus protein VP39 255 336 IPR029063 -
Car02g00061 1325 Gene3D Vaccinia Virus protein VP39 455 585 IPR029063 -
Car02g00061 1325 Pfam WW domain 607 637 IPR001202 GO:0005515
Car02g00061 1325 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 744 772 IPR014014 GO:0003724
Car02g00061 1325 MobiDBLite consensus disorder prediction 1218 1234 - -
Car02g00061 1325 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 895 903 IPR000629 -
Car02g00061 1325 MobiDBLite consensus disorder prediction 1270 1294 - -
Car02g00061 1325 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 677 1203 - -
Car02g00061 1325 MobiDBLite consensus disorder prediction 1238 1262 - -
Car02g00061 1325 ProSitePatterns WW/rsp5/WWP domain signature. 611 637 IPR001202 GO:0005515
Car02g00061 1325 MobiDBLite consensus disorder prediction 1114 1155 - -
Car02g00061 1325 Gene3D - 602 658 - -
Car02g00061 1325 ProSiteProfiles SAM-dependent methyltransferase DRM-type domain profile. 257 592 IPR030380 GO:0006306
Car02g00061 1325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 816 1099 IPR027417 -
Car02g00061 1325 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 464 561 IPR029063 -
Car02g00061 1325 Gene3D - 954 1124 IPR027417 -
Car02g00061 1325 SMART helicmild6 1003 1083 IPR001650 -
Car02g00061 1325 MobiDBLite consensus disorder prediction 1170 1325 - -
Car02g00061 1325 SUPERFAMILY WW domain 599 638 IPR036020 GO:0005515
Car02g00061 1325 MobiDBLite consensus disorder prediction 634 660 - -
Car02g00061 1325 Pfam C-5 cytosine-specific DNA methylase 465 555 IPR001525 GO:0008168
Car02g00061 1325 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 677 1203 - -
Car02g00061 1325 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 978 1122 IPR001650 -
Car02g00061 1325 Gene3D - 721 953 IPR027417 -
Car02g00061 1325 MobiDBLite consensus disorder prediction 1183 1217 - -
Car02g00061 1325 MobiDBLite consensus disorder prediction 634 723 - -
Car02g00061 1325 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 259 457 IPR029063 -
Car02g00061 1325 SMART ultradead3 763 966 IPR014001 -
Car02g00061 1325 CDD WW 608 637 IPR001202 GO:0005515
Car02g00061 1325 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 775 949 IPR014001 -
Car02g00061 1325 Pfam DEAD/DEAH box helicase 768 938 IPR011545 GO:0003676|GO:0005524
Car02g00061 1325 MobiDBLite consensus disorder prediction 669 702 - -
Car02g00061 1325 Pfam Helicase conserved C-terminal domain 975 1083 IPR001650 -
Car02g00061 1325 SMART ww_5 606 639 IPR001202 GO:0005515
Car02g00061 1325 MobiDBLite consensus disorder prediction 95 122 - -
Car02g00061 1325 ProSiteProfiles WW/rsp5/WWP domain profile. 605 639 IPR001202 GO:0005515
Car02g00061 1325 MobiDBLite consensus disorder prediction 95 142 - -
Car02g00061 1325 CDD SF2_C_DEAD 963 1092 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00061 Car-Chr2 540379 554052 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00061 742 1121 Eukaryotic Initiation Factors Gene Family AT3G19760 34.121 2.03e-64 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00061 K12823 - gmx:100786511 1058.51