Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00056 ATGGCTCCCCCAATCGAACTCATCGAGCCTGAGATTCTCCGTTTCAAGGCATACGAGCCTATACTCCTTCTCGGAAGGCACCGTTTCGCCGGCGTCGATATGAGGATCAGAGTGAAGGGAGGAGGGCACACTTCTCATATCTATGCCATCAGACAGAGTATCGCGAAGGCTTTGGTTGCATACTATCAAAAATGTGTGGATGAACAGAGGAAAGGATTATATGACACAATTTCAATTTGGGAATGGAGCCTTGCTAGGGGCAAATTATATTCAGATCTCGCCTCTGTACTCTTAGTTTGCGGCGGCGAGAGGGTCCAAAATGGAACAGGTACAGTGCTTCGGCCGCACCGTTTCGCCGGCGTTGACATGAGGATCAGAGTGAAGGGAGGAGGACATACTTCTCAGATCTATGCCATCAGACAGAGCATCGCAAAGGCCTTGGTTGCATACTATCAGAAATATGTGGATGAACAGAGTAAGAAGGAGATCAAGGACATTCTTGTTCGTTATGACCGTACTCTTCTTGTTGCTGATCCTAGACGCTGCGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTGCTAGATTTTCAAGTTCCTCACAAGTAATAAATGATAAAGATGTTTCAGTCCAGCCAATCTTGGGTACAAATAAAGGCTTCTATGGTAGACAATGTCAAAGAACTACGGTAAGGATCAAGTACTCTTCCTCCACTACTGAAATAGATTCAAAGGCTACACTGGTTGTAGGTATAGCCAAAACATCTCTTGCAATTCTTGCAAAGTATAGGAAATCGGCTTGA 801 0.4569 MAPPIELIEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSHIYAIRQSIAKALVAYYQKCVDEQRKGLYDTISIWEWSLARGKLYSDLASVLLVCGGERVQNGTGTVLRPHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFSSSSQVINDKDVSVQPILGTNKGFYGRQCQRTTVRIKYSSSTTEIDSKATLVVGIAKTSLAILAKYRKSA 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00056 266 ProSitePatterns Ribosomal protein S9 signature. 129 147 IPR020574 GO:0003735|GO:0005840|GO:0006412
Car02g00056 266 PANTHER 30S RIBOSOMAL PROTEIN S9P 113 199 - -
Car02g00056 266 Gene3D - 2 92 IPR014721 -
Car02g00056 266 PANTHER 30S RIBOSOMAL PROTEIN S9P 4 72 - -
Car02g00056 266 PANTHER RIBOSOMAL PROTEIN S9 113 199 IPR000754 GO:0003735|GO:0005840|GO:0006412
Car02g00056 266 SUPERFAMILY Ribosomal protein S5 domain 2-like 116 199 IPR020568 -
Car02g00056 266 PANTHER RIBOSOMAL PROTEIN S9 4 72 IPR000754 GO:0003735|GO:0005840|GO:0006412
Car02g00056 266 Pfam Ribosomal protein S9/S16 120 197 IPR000754 GO:0003735|GO:0005840|GO:0006412
Car02g00056 266 Pfam Ribosomal protein S9/S16 11 71 IPR000754 GO:0003735|GO:0005840|GO:0006412
Car02g00056 266 Gene3D - 93 200 IPR014721 -
Car02g00056 266 SUPERFAMILY Ribosomal protein S5 domain 2-like 4 72 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00056 Car-Chr2 514637 519772 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00056 4 84 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 71.951 1.42e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00056 K02960 - oeu:111381120 155.606