Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00048 ATGGACATTCCAAAATCACAATCGGTCTTCAACATCGTCGCTTCAAGGGCGCTCAATTCCTTTCAAGTTCGAAAACGACCTCACATGGATGGATGGTTTCATGGTTTTCAAGAAATCGGAGCTGTAGCTTCACAGCACAATTCTGAAGACATTGTTCCCATCGCTCTCTCATTCGCTAAGACTACAAAATATTCGCATATTCTCGCCTTATCAGATGAGGAGGGGTATGTAAGATTGTTTAATACTCGCCGCCAATTCGCAGTTCCCGTGTCCTTCGAAAAAAATGCTGAGGAAGCAACGATTTCTGAGTGGAGTTCCCATTATAATGCAGTTTTTGATGTTTGTTGGATAAAGGATGATACGCAGATCCTCACGGCATCTGGTGATCAAACGGTGAAGATATGGGATGTTCAAGAAAAAAAGTGTCTTGGAACGTTAGCCGGGCATAACGGGAGTGTGAAATCTATTTGTTCTCATCCAACTAATTCTGATATTATTGTCTCTGGTTCAAGAGATGGATGCTTTCGTATTTGGGACTTAAGATGTAACTCCAAGTCAAAAAATAGACGTGGAGAAGTTACCATAGGTTCAACAGCTGTTGTTGAAGGAGCACATGTTTCATCTCAAGCACAGCGAGTAAGGAGGGGCAAGACTGCTTCCATGAGCATTACATCTGTTCTTTGGCTCAAGGATCAATTTTCCATAGCCACTGCTGGGGCAGTGAATAGTGTGTTGAAGTTTTGGGATACCAGAAATCTTAAAAGTATTGTCACACAGGCATGGCCTCAGCCTCAGTCAACAGGAAAGCAAAGATTACATGGTATATCTAGCTTGTCCCAAGATGACAGTGGAGTTTTACTCTCAGCTTCCTGCATGGATAGCCGAGTTTATCTATATAATATACTTCAAGTTGAAAAGGGACCTTTAAGATATTTTGAAGGAGGTCGCATAGATTCATTTTTTGTAAAGGCTGCAATAAGCCCCGATGCGTCAAACATAGTTTGTGGTTCTAGTAATGGAAAAGCATATGTTTGGCAGGTTAACAAGCCCCAGGTGGAACCTACCATTTTGAAGAGTCATGATGAGGAAGTTACTGCAGTTGACTGGTGCCGCTCGGATATTGGAAAATTAGCAACTGCATCTGATGATTTCACAGTCCGGTTATGGAAAAAATGCAGTTATGTTAGCACAACAAAGTCTCCATTTGCCATCCGAAGAAGAGTTATGGCCATGCCTAGTACAGAGTGCAAAATGCTATTAAATAATGAAGAAGTTGGCCCCAAGTCAGGTGACTCTGGTTTATCATCCAATGAAGCACCGCAAAACCCAGTTAAGTCAGCCACTCCAGTTACACCACAAAAAATGACATCTGAAGGCCATAAGAACCAACTTTCAGCAGAACTTGATCTAACTATATCTCCTCAAAAAACTCCAGAGTGTGCTTTGAAGAGCCCTTCATCTAGGTGGTATGTGTGGCTTGGAATTTCTTCAACCTTGTTATTGGGTTATTTGAAATGTAAAGTGCATAAGGATTGGTTTTTGCAAGGATTGCTAAAGCTGTACAATTTTTTTGCTTCTGCTGATTTGCCAGAGACAATTGTTCAGAAACGACCTAAAATGGATAAACTACTCTCTGTCTACAATGAAATTGAAGCTATACATATATTCAACGATGAATTCGATTTTATACCATTTGCTATCTCCTTCTCTAAGACTTCAAAACGTTGCTACGACATCGCTGTAGCTGATGAGCATGGCTACGTGACCTTGTTTGACACTCGACGCAACAAAACAAAGAAGATATGCGAATGGATTGCGCATCAAGTGAGCTCAACTGTGTTTTTTACTGAAGTTTATGATCTCTGTTGGATTAAGGAAGATACCCAAATTCTCACTGCTTCTGGTGATAAAACTGTGAAAGTATGGGATCTTCAACAAAAGGATTGTCTTGGAGCTTTAAGGGGGCACACAGACTTTGTTCAATCTATTTGTTCTCATCCAACTAATCATGCAATCACCATTCCTCTTATCTCCAAATTTACAGATATTATTGTCTCTGGTTCAAGAGATAAATCGTTTCGTCTTTGGGACTTAAGATGCAAGTCAAATGCTGAGAGTGGAGATGGAGAGATTAGCATAAGTTCAACTGCTGTCGTCAAACGCGCCCATCTTTATTATGATGAAGAAGACAGACAAGTTGATTCCATGGGCATTAGATCTGTTCTTTGGCTCAAGGATCAAGTTTCCATAGCCACTGCTGGGTCAAAAGATAGTGTGCCAAAGTTTTGGGATACCAGATATTTGAAACAAGATGTCACATATACAGGTCTTCTTCCTCGGTCAACAGAAAAGCAAAGATTACATGGTTTAACTAGCTTGTCCCAAGATGACCATGGAGTTTTCCTTTTAGCTTCCTGCAAGGATAACCGAATTTATCTATATAATATACTTCAAAATAAAAAGGAGCCTTTAAGATATTTTGAAGGAGATAGAATATCATTTTCCGGAAAGGCTGCAATTAGCCCTGATGCATTGAACATAGGTTGCTGTTCTAGAGAAGGAAAAGTATATATTTGGCAGCTTAACAAGCCTGAAGAAGAACCTACTATTTTGAGTCCGAAAGAGGAAGAATCTGCTTACGGGTTTTACTGGTCCTGCACCGAGTTTGGAAAATTTGCAACTTCTGGTGATTACAGAGTCCGGATATGGAATAAAGAAGTTACAATTCCAGAATAA 2736 0.402 MDIPKSQSVFNIVASRALNSFQVRKRPHMDGWFHGFQEIGAVASQHNSEDIVPIALSFAKTTKYSHILALSDEEGYVRLFNTRRQFAVPVSFEKNAEEATISEWSSHYNAVFDVCWIKDDTQILTASGDQTVKIWDVQEKKCLGTLAGHNGSVKSICSHPTNSDIIVSGSRDGCFRIWDLRCNSKSKNRRGEVTIGSTAVVEGAHVSSQAQRVRRGKTASMSITSVLWLKDQFSIATAGAVNSVLKFWDTRNLKSIVTQAWPQPQSTGKQRLHGISSLSQDDSGVLLSASCMDSRVYLYNILQVEKGPLRYFEGGRIDSFFVKAAISPDASNIVCGSSNGKAYVWQVNKPQVEPTILKSHDEEVTAVDWCRSDIGKLATASDDFTVRLWKKCSYVSTTKSPFAIRRRVMAMPSTECKMLLNNEEVGPKSGDSGLSSNEAPQNPVKSATPVTPQKMTSEGHKNQLSAELDLTISPQKTPECALKSPSSRWYVWLGISSTLLLGYLKCKVHKDWFLQGLLKLYNFFASADLPETIVQKRPKMDKLLSVYNEIEAIHIFNDEFDFIPFAISFSKTSKRCYDIAVADEHGYVTLFDTRRNKTKKICEWIAHQVSSTVFFTEVYDLCWIKEDTQILTASGDKTVKVWDLQQKDCLGALRGHTDFVQSICSHPTNHAITIPLISKFTDIIVSGSRDKSFRLWDLRCKSNAESGDGEISISSTAVVKRAHLYYDEEDRQVDSMGIRSVLWLKDQVSIATAGSKDSVPKFWDTRYLKQDVTYTGLLPRSTEKQRLHGLTSLSQDDHGVFLLASCKDNRIYLYNILQNKKEPLRYFEGDRISFSGKAAISPDALNIGCCSREGKVYIWQLNKPEEEPTILSPKEEESAYGFYWSCTEFGKFATSGDYRVRIWNKEVTIPE 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00048 911 ProSiteProfiles Trp-Asp (WD) repeats profile. 618 652 IPR001680 GO:0005515
Car02g00048 911 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 181 - -
Car02g00048 911 Gene3D - 532 710 IPR015943 GO:0005515
Car02g00048 911 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 188 IPR001680 GO:0005515
Car02g00048 911 PANTHER BNAA06G31940D PROTEIN 533 907 - -
Car02g00048 911 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 138 - -
Car02g00048 911 PANTHER BNAA06G31940D PROTEIN 2 487 - -
Car02g00048 911 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 357 390 - -
Car02g00048 911 Gene3D - 33 190 IPR015943 GO:0005515
Car02g00048 911 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 390 IPR001680 GO:0005515
Car02g00048 911 SUPERFAMILY WD40 repeat-like 65 394 IPR036322 GO:0005515
Car02g00048 911 MobiDBLite consensus disorder prediction 426 457 - -
Car02g00048 911 ProSitePatterns Trp-Asp (WD) repeats signature. 630 644 IPR019775 -
Car02g00048 911 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 533 907 - -
Car02g00048 911 Gene3D - 196 404 IPR015943 GO:0005515
Car02g00048 911 PRINTS G protein beta WD-40 repeat signature 684 698 IPR020472 -
Car02g00048 911 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Car02g00048 911 PRINTS G protein beta WD-40 repeat signature 630 644 IPR020472 -
Car02g00048 911 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 145 IPR001680 GO:0005515
Car02g00048 911 Gene3D - 711 909 IPR015943 GO:0005515
Car02g00048 911 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 2 487 - -
Car02g00048 911 Pfam WD domain, G-beta repeat 101 136 IPR001680 GO:0005515
Car02g00048 911 Pfam WD domain, G-beta repeat 141 179 IPR001680 GO:0005515
Car02g00048 911 Pfam WD domain, G-beta repeat 605 643 IPR001680 GO:0005515
Car02g00048 911 Pfam WD domain, G-beta repeat 356 390 IPR001680 GO:0005515
Car02g00048 911 Pfam WD domain, G-beta repeat 648 697 IPR001680 GO:0005515
Car02g00048 911 SUPERFAMILY WD40 repeat-like 562 905 IPR036322 GO:0005515
Car02g00048 911 MobiDBLite consensus disorder prediction 428 457 - -
Car02g00048 911 ProSitePatterns Trp-Asp (WD) repeats signature. 123 137 IPR019775 -
Car02g00048 911 SMART WD40_4 97 136 IPR001680 GO:0005515
Car02g00048 911 SMART WD40_4 265 300 IPR001680 GO:0005515
Car02g00048 911 SMART WD40_4 305 346 IPR001680 GO:0005515
Car02g00048 911 SMART WD40_4 820 860 IPR001680 GO:0005515
Car02g00048 911 SMART WD40_4 864 904 IPR001680 GO:0005515
Car02g00048 911 SMART WD40_4 780 815 IPR001680 GO:0005515
Car02g00048 911 SMART WD40_4 139 179 IPR001680 GO:0005515
Car02g00048 911 SMART WD40_4 646 697 IPR001680 GO:0005515
Car02g00048 911 SMART WD40_4 350 390 IPR001680 GO:0005515
Car02g00048 911 SMART WD40_4 207 249 IPR001680 GO:0005515
Car02g00048 911 SMART WD40_4 597 643 IPR001680 GO:0005515
Car02g00048 911 ProSiteProfiles Trp-Asp (WD) repeats profile. 684 706 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00048 Car-Chr2 453675 463607 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00048 101 310 U-box Gene Family AT1G04510 27.155 5.40e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00048 K11790 - gmx:100819114 655.21